Hi all, As a learning exercise and to do a bit of tinkering with BioJava I have partially converted a copy of FastaFormat.java to GCGFormat.java. This allows me to write out to a file in GCC sequence format from BioJava. (It's not perfect yet though.) This is all I need it to do for the task in hand.
However, if there is interest I could work on making it read GCG files as well and then put the result back into biojava, with these caveats: i. This is just a learning exercise for me, so the Java might not be the slickest you'll ever see :) ii. I'd need some input from anyone that used it, as I have only tested it on my own stuff. I'd also need input on writing a test for it etc. iii. Mostly the code is just a copy/port of the bioperl GCG.pm module by Lincoln Stein and Ewan Birney, so I'd have to check with them that is was alright by them. Cheers, Andrew. _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
