Hi - I for one would be keen to see a GCG reader.
If you like I could give you a hand, I have had some experience with the biojava seqIO. - Mark > -----Original Message----- > From: Andrew Macgregor [mailto:[EMAIL PROTECTED]] > Sent: Wednesday, 16 October 2002 1:27 p.m. > To: BioJava > Subject: [Biojava-l] GCC Sequence Format (again...) > > > Hi all, > > As a learning exercise and to do a bit of tinkering with > BioJava I have partially converted a copy of FastaFormat.java > to GCGFormat.java. This allows me to write out to a file in > GCC sequence format from BioJava. (It's not perfect yet > though.) This is all I need it to do for the task in hand. > > However, if there is interest I could work on making it read > GCG files as well and then put the result back into biojava, > with these caveats: > > i. This is just a learning exercise for me, so the Java might > not be the slickest you'll ever see :) > > ii. I'd need some input from anyone that used it, as I have > only tested it on my own stuff. I'd also need input on > writing a test for it etc. > > iii. Mostly the code is just a copy/port of the bioperl > GCG.pm module by Lincoln Stein and Ewan Birney, so I'd have > to check with them that is was alright by them. > > Cheers, Andrew. > > > > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
