Sorry meant to forward this to the list... -----Original Message----- From: Schreiber, Mark Sent: Thursday, 24 October 2002 11:09 a.m. To: 'andy hammer' Subject: RE: [Biojava-l] Newbie Question 2: Searching Sequences for regular expressions
To clarify... There is not yet any formal RE parser that works on biojava Symbol objects. You can replicate the behaivour by making a Markov chain and using it to parse any input to see if it matches (or even how well it matches). A class that takes some kind of Symbolic representation of an RE and makes the appropriate Markov chain would be cool though, anyone got a spare day or too? - Mark > -----Original Message----- > From: andy hammer [mailto:ahammer@;genetics.utah.edu] > Sent: Thursday, 24 October 2002 10:58 a.m. > To: [EMAIL PROTECTED] > Subject: [Biojava-l] Newbie Question 2: Searching Sequences > for regular expressions > > > Is there any way to search a sequence for a regular expression? > > Andy Hammer > University of Utah > Human Genetics _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
