biojava-l  

Messages by Thread

• [Biojava-l] Parse error with negative strand CDS Criscuolo, Fred
  • RE: [Biojava-l] Parse error with negative strand CDS Schreiber, Mark
  • RE: [Biojava-l] Parse error with negative strand CDS Peter Wilkinson
  • RE: [Biojava-l] Parse error with negative strand CDS Schreiber, Mark
  • RE: [Biojava-l] Parse error with negative strand CDS Peter Wilkinson
• [Biojava-l] Protein digest Robert Stones
• [Biojava-l] Parsing location from gbk files charles.girar...@libertysurf.fr
  • RE: [Biojava-l] Parsing location from gbk files Schreiber, Mark
  • Re: [Biojava-l] Parsing location from gbk files Matthew Pocock
• [Biojava-l] Reformating multiple sequence alignments Gabriel del Rio Guerra
  • RE: [Biojava-l] Reformating multiple sequence alignments Schreiber, Mark
• [Biojava-l] Best way to represent multiple annotation "tracks" Ihab A.B. Awad
  • RE: [Biojava-l] Best way to represent multiple annotation "tracks" Schreiber, Mark
  • RE: [Biojava-l] Best way to represent multiple annotation "tracks" Ihab A.B. Awad
  • RE: [Biojava-l] Best way to represent multiple annotation "tracks" Ihab A.B. Awad
• [Biojava-l] reading sequences from xml files... Jan Würthner
  • Re: [Biojava-l] reading sequences from xml files... Matthew Pocock
  • Re: [Biojava-l] reading sequences from xml files... Jan Würthner
• [Biojava-l] Biosql performance numbers? Christopher Mason
  • [Biojava-l] Re: Biosql performance numbers? Eric Jain
• [Biojava-l] NEXUS in biojava. Suman Kanuganti
  • [Biojava-l] Test Peter Wilkinson
• [Biojava-l] Biojava in Artemis Derek Gatherer
  • Re: [Biojava-l] Biojava in Artemis Thomas Down
  • RE: [Biojava-l] Biojava in Artemis Schreiber, Mark
  • RE: [Biojava-l] Biojava in Artemis David Huen
• RE: [Biojava-l] Nightly checkin reports (Re: [Biojava-dev] biojava/Security) Schreiber, Mark
  • Re: [Biojava-l] Nightly checkin reports (Re: [Biojava-dev] biojava/Security) Thomas Down
  • Re: [Biojava-l] Nightly checkin reports (Re: [Biojava-dev] biojava/Security) Matthew Pocock
  • [Biojava-l] hello martin gomez
  • Re: [Biojava-l] hello Thomas Down
• [Biojava-l] Is there a Java implementation of SW that also returns Nsuboptimal alignments David Nix
  • Re: [Biojava-l] Is there a Java implementation of SW that alsoreturns N suboptimal alignments Matthew Pocock
• [Biojava-l] Modelling sequence variants Devereau Andrew (RW3) CM&MC Manchester
  • Re: [Biojava-l] Modelling sequence variants Matthew Pocock
• [Biojava-l] Genbank Feature properties Suman Kanuganti
  • [Biojava-l] virtual conference open registrations Willy Valdivia Granda
• [Biojava-l] Connecting to GenBank - Found the problem! l...@cantv.net
• [Biojava-l] Connecting to GenBank - BioException l...@cantv.net
• [Biojava-l] Serialisation of Sequences Vasa Curcin
  • RE: [Biojava-l] Serialisation of Sequences Schreiber, Mark
• [Biojava-l] Re: Running apps with Java hg6800
• [Biojava-l] Where can I find the PDB2XML parser demo program? Ng Peck Leng
  • Re: [Biojava-l] Where can I find the PDB2XML parser demo program? Thomas Down
  • [Biojava-l] I don't know why I can't let my program read SCF files. Shin Negishi
  • Re: [Biojava-l] Where can I find the PDB2XML parser demo program? Ng Peck Leng
• [Biojava-l] Nightly checkin reports (Re: [Biojava-dev] biojava /Security) Thomas Down
  • Re: [Biojava-l] Nightly checkin reports (Re: [Biojava-dev] biojava /Security) Matthew Pocock
  • RE: [Biojava-l] Nightly checkin reports Francois Pepin
  • Re: [Biojava-l] Nightly checkin reports (Re: [Biojava-dev] biojava/ Security) Michael Heuer
  • Re: [Biojava-l] Nightly checkin reports (Re: [Biojava-dev] biojava /Security) Thomas Down
• [Biojava-l] Connecting to GenBank l...@cantv.net
  • Re: [Biojava-l] Connecting to GenBank Matthew Pocock
• [Biojava-l] Re: [Root-l] Denied access to download directory Thomas Down
• [Biojava-l] (Re)How to Use SixFrameRenderer and related classes?(fwd) hywang
• [Biojava-l] Announcing: BJIA in Japanese Schreiber, Mark
• [Biojava-l] Re: Biojava-l Digest, Vol 8, Issue 6 w...@mail.cbi.pku.edu.cn
  • [Biojava-l] Re: Biojava-l Digest, Vol 8, Issue 6 w...@mail.cbi.pku.edu.cn
  • RE: [Biojava-l] Re: Biojava-l Digest, Vol 8, Issue 6 Schreiber, Mark
• [Biojava-l] Problems with Baum-Welch training hlr02
• [Biojava-l] Re: biojava-acedb Francois Pepin
  • [Biojava-l] Re: biojava-acedb Suman Kanuganti
  • RE: [Biojava-l] Re: biojava-acedb Francois Pepin
  • RE: [Biojava-l] Re: biojava-acedb Suman Kanuganti
• [Biojava-l] ProcessTools news Thomas Down
  • Re: [Biojava-l] ProcessTools news Francois Pepin
  • Re: [Biojava-l] ProcessTools news Thomas Down
• Re: [Biojava-l] Running apps with Java Patrick McConnell
  • Re: [Biojava-l] Running apps with Java Thomas Down
  • [Biojava-l] BLAST with Biojava Ryan Golhar
  • Re: [Biojava-l] BLAST with Biojava Thomas Down
  • Re: [Biojava-l] Running apps with Java Keith James
  • [Biojava-l] Running apps with Java Schreiber, Mark
  • Re: [Biojava-l] Running apps with Java Thomas Down
  • Re: [Biojava-l] Running apps with Java Thomas Down
  • Re: [Biojava-l] Running apps with Java Tom Oinn
  • Re: [Biojava-l] Running apps with Java Francois Pepin
  • RE: [Biojava-l] Running apps with Java Schreiber, Mark
  • RE: [Biojava-l] Running apps with Java Michael Heuer
  • Re: [Biojava-l] Running apps with Java Patrick McConnell
  • RE: [Biojava-l] Running apps with Java Schreiber, Mark
  • Re: [Biojava-l] Running apps with Java Patrick McConnell
  • RE: [Biojava-l] Running apps with Java Patrick McConnell
  • Re: [Biojava-l] Running apps with Java Tom Oinn
  • Re: [Biojava-l] Running apps with Java Martin Senger
  • Re: [Biojava-l] Running apps with Java Phillip Lord
  • Re: [Biojava-l] Running apps with Java Francois Pepin
  • Re: [Biojava-l] Running apps with Java David Huen
  • Re: [Biojava-l] Running apps with Java Francois Pepin
  • [Biojava-l] Re: Running apps with Java Eric Jain
  • Re: [Biojava-l] Re: Running apps with Java Francois Pepin
  • Re: [Biojava-l] Re: Running apps with Java Thomas Down
  • Re: [Biojava-l] Re: Running apps with Java Francois Pepin
• [Biojava-l] biojava-acedb Suman Kanuganti
  • Re: [Biojava-l] biojava-acedb Matthew Pocock
• [Biojava-l] Re: Biojava-l Digest, Vol 8, Issue 3 hywang
• [Biojava-l] help with installing biojava on windows 2000 Halfdan Rydbeck
  • Re: [Biojava-l] help with installing biojava on windows 2000 Thomas Down
  • [Biojava-l] help with installing biojava on windows 2000 Halfdan Rydbeck
• [Biojava-l] found the problem Halfdan Rydbeck
• [Biojava-l] problems installing biojava on Windows 2000 David Millis
  • RE: [Biojava-l] problems installing biojava on Windows 2000 Schreiber, Mark
  • RE: [Biojava-l] problems installing biojava on Windows 2000 David Millis
  • RE: [Biojava-l] problems installing biojava on Windows 2000 Matthew Pocock
  • RE: [Biojava-l] problems installing biojava on Windows 2000 DeAngelo Lampkin
• [Biojava-l] Re: How to Use SixFrameRenderer and related classes? David Huen
• [Biojava-l] How to Use SixFrameRenderer and related classes? (fwd) hywang
  • [Biojava-l] How to Use SixFrameRenderer and related classes? (fwd) hywang
• [Biojava-l] bug using getFeature() ? Alberto Ambesi
  • Re: [Biojava-l] bug using getFeature() ? Thomas Down
• [Biojava-l] Apache xerces for java/xml Jennifer Thornton
  • RE: [Biojava-l] Apache xerces for java/xml DeAngelo Lampkin
• [Biojava-l] IT WORKED!!!! (Biojava and Servlets) l...@cantv.net
• [Biojava-l] BioJava in Anger in French Schreiber, Mark
• [Biojava-l] Help Hailong Meng
  • RE: [Biojava-l] Help Schreiber, Mark
  • RE: [Biojava-l] Help Hailong Meng
  • Re: [Biojava-l] Help Matthew Pocock
  • Re: [Biojava-l] Help Hailong Meng
  • RE: [Biojava-l] Help Schreiber, Mark
  • RE: [Biojava-l] Help Hailong Meng
• [Biojava-l] Multiple sequence alignment hlr02
  • Re: [Biojava-l] Multiple sequence alignment Matthew Pocock
  • [Biojava-l] multiple sequence alignment katikaneni avinash rao
  • Re: [Biojava-l] multiple sequence alignment Patrick McConnell
• [Biojava-l] Sequence retrieval Jeffrey Rosenfeld
  • Re: [Biojava-l] Sequence retrieval Keith James
• [Biojava-l] Biojava Perl arun a
  • RE: [Biojava-l] Biojava Perl Schreiber, Mark
• [Biojava-l] Display components of an assembly (contig) multilined f . maiwald
  • Re: [Biojava-l] Display components of an assembly (contig) multilined Matthew Pocock
• [Biojava-l] RE: not biojava... Russell Smithies
• [Biojava-l] Your biojava.org website accounts
• [Biojava-l] Consulta l...@cantv.net
• [Biojava-l] BIOJava arun a
  • RE: [Biojava-l] BIOJava Schreiber, Mark
• [Biojava-l] bug with SeqIOTools.readFastaDNA? Karin Lagesen
  • Re: [Biojava-l] bug with SeqIOTools.readFastaDNA? Thomas Down
• [Biojava-l] Seeking Your Partnership Mr. Steve Young
• [Biojava-l] not biojava... Russell Smithies
  • RE: [Biojava-l] not biojava... DeAngelo Lampkin
• [Biojava-l] Partial path probs Schreiber, Mark
  • Re: [Biojava-l] Partial path probs Thomas Down
  • Re: [Biojava-l] Partial path probs Matthew Pocock
  • RE: [Biojava-l] Partial path probs Schreiber, Mark
  • Re: [Biojava-l] Partial path probs Thomas Down
• [Biojava-l] Minor SCF patch Thomas Down
• [Biojava-l] Re: Questions about ChromatogramGraphic and yourChromatogram Viewer Rhett Sutphin
  • [Biojava-l] Re: Questions about ChromatogramGraphic and yourChromatogram Viewer Rhett Sutphin
• RE: [Biojava-l] Re: PDB file import Schreiber, Mark
• RE: [Biojava-l] Is there setModeLazy()-like functionalityforBlastParserFacade? Schreiber, Mark
• [Biojava-l] Is there setModeLazy()-like functionality forBlastParserFacade? DeAngelo Lampkin
• RE: [Biojava-l] Error initializing uniform protein distribution Schreiber, Mark
• [Biojava-l] bytecode jar biojava-live build wierdness... DeAngelo Lampkin
  • Re: [Biojava-l] bytecode jar biojava-live build wierdness... David Huen
  • RE: [Biojava-l] bytecode jar biojava-live build wierdness... Schreiber, Mark
  • Re: [Biojava-l] bytecode jar biojava-live build wierdness... Matthew Pocock
  • RE: [Biojava-l] bytecode jar biojava-live build wierdness... DeAngelo Lampkin
• [Biojava-l] mini T-Rex Russell Smithies
• RE: [Biojava-l] Creating a dp object for a profile HMM (2) Schreiber, Mark
• [Biojava-l] source codes for bytecode.jar, xerces.jar,jakarta-regexp.jar & htmlparser.jar Yu Wang
  • Re: [Biojava-l] source codes for bytecode.jar, xerces.jar,jakarta-regexp.jar & htmlparser.jar David Huen
  • Re: [Biojava-l] source codes for bytecode.jar, xerces.jar,jakarta-regexp.jar & htmlparser.jar Thomas Down
  • Re: [Biojava-l] source codes for bytecode.jar, xerces.jar,jakarta-regexp.jar & htmlparser.jar Thomas Down
  • RE: [Biojava-l] source codes for bytecode.jar, xerces.jar,jakarta-regexp.jar & htmlparser.jar Schreiber, Mark
• [Biojava-l] PDB file import Vasa Curcin
  • Re: [Biojava-l] PDB file import Keith James
  • RE: [Biojava-l] PDB file import Schreiber, Mark
  • Re: [Biojava-l] PDB file import Matthew Pocock
  • [Biojava-l] Re: PDB file import Niklas Gustavsson
• [Biojava-l] Creating a dp object for a profile HMM hlr02
  • [Biojava-l] Creating a dp object for a profile HMM (2) hlr02
  • Re: [Biojava-l] Creating a dp object for a profile HMM (2) Matthew Pocock
  • Re: [Biojava-l] Creating a dp object for a profile HMM (2) Matthew Pocock
  • [Biojava-l] Error initializing uniform protein distribution hlr02
  • Re: [Biojava-l] Error initializing uniform protein distribution David Huen
• [Biojava-l] Bug in SeqIOTools.writeSwissProt() method? Len Trigg
• [Biojava-l] Massaging multi-query BLAST XML output... DeAngelo Lampkin
  • Re: [Biojava-l] Massaging multi-query BLAST XML output... David Huen
  • Re: [Biojava-l] Massaging multi-query BLAST XML output... Matthew Pocock
  • RE: [Biojava-l] Massaging multi-query BLAST XML output... Schreiber, Mark
  • RE: [Biojava-l] Massaging multi-query BLAST XML output... DeAngelo Lampkin
  • RE: [Biojava-l] Massaging multi-query BLAST XML output... DeAngelo Lampkin
  • RE: [Biojava-l] Massaging multi-query BLAST XML output... David Huen
  • Re: [Biojava-l] Massaging multi-query BLAST XML output... Matthew Pocock
  • Re: [Biojava-l] Massaging multi-query BLAST XML output... Michael Heuer
  • Re: [Biojava-l] Massaging multi-query BLAST XML output... Michael Heuer
  • RE: [Biojava-l] Massaging multi-query BLAST XML output... Schreiber, Mark
• [Biojava-l] You major CVD commit Sylvain Foisy
  • Re: [Biojava-l] You major CVD commit Thomas Down
  • [Biojava-l] Re: You major CVD commit Matthew Pocock
• [Biojava-l] IllegalSymbolException yves mattheß
• [Biojava-l] Finding Annotation keys for parsed reports andinconsistent Blast parsing errors... DeAngelo Lampkin
  • Re: [Biojava-l] Finding Annotation keys for parsed reportsand inconsistent Blast parsing errors... Matthew Pocock
  • Re: [Biojava-l] Finding Annotation keys for parsed reports andinconsistent Blast parsing errors... Keith James
• [Biojava-l] major CVS commit Matthew Pocock
• [Biojava-l] Complement feature in CDS table Y D Sun
  • Re: [Biojava-l] Complement feature in CDS table Thomas Down
  • RE: [Biojava-l] Complement feature in CDS table Y D Sun
  • Re: [Biojava-l] Complement feature in CDS table Simon Foote

• Earlier messages
• Later messages