>>>>> "Matthew" == Matthew Pocock <[EMAIL PROTECTED]> writes:
[...]
Matthew> One is legacy but knows that it is indexing
Matthew> sequences. The other is actively supported by me and
Matthew> conforms to the OBDA spec for flat file indexes but
Matthew> doesn't know that it is indexing sequences. We should
Matthew> phaze out IndexStore and make it trivial to use BioStore
Matthew> to index sequences with a known type. The ongoing work
Matthew> with SeqIOTools file format constants will be invaluable
Matthew> here.
Ah, I see. I was looking for whether/how I should make the EMBL-CDROM
index access code fit in with the newer interfaces. I think we should
preserve its functionality as it provides direct access to flatfiles
indexed by EMBOSS.
Keith
--
- Keith James <[EMAIL PROTECTED]> bioinformatics programming support -
- Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, UK -
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