On Mon, Dec 02, 2002 at 10:44:27AM +0000, Keith James wrote:
>
> I don't think this method is behaving as expected. Passing the
> FiniteAlphabets from the following Symbols gets these results:
>
> a -> getMatches() -> getAllSymbols -> tokenize -> -a
> c -> getMatches() -> getAllSymbols -> tokenize -> -c
> g -> getMatches() -> getAllSymbols -> tokenize -> -g
> t -> getMatches() -> getAllSymbols -> tokenize -> -t
> n -> getMatches() -> getAllSymbols -> tokenize -> tnn-nannnngncnnn
Okay, looks like I broke this when fixing serialization of
ambiguity-symbols. Ugh, serialization...
It's fixed for now (see AlphabetManagerTest). If we ever re-write
this code we *must* use some kind of globally unique names (URLs?)
for Symbols and Alphabets, otherwise we'll end up in this mess
again.
Thomas.
_______________________________________________
Biojava-l mailing list - [EMAIL PROTECTED]
http://biojava.org/mailman/listinfo/biojava-l