I haven't had the time to check all of biojava for that, but I have code to call external applications here.
Or you can look at the Runtime class (more specifically Runtime.exec()), that's the java command to call outside stuff. Francois -----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED]] On Behalf Of suyee Sent: 16 decembre, 2002 01:37 To: [EMAIL PROTECTED] Subject: [Biojava-l] ClustalW enquiry Hi, I am Su Yee, a polytechnic student from Singapore. Currently, i am doingon a project on ClustalW. can anybody tell me how to use Java call the clustalw.exe and pass in all the parameters needed as i dont have enough time to convert all the clustalw C code into Java Language. Besides that, i still unclear with the pairwise alignment - fast/approximate part, is there any tutorial/ website i can refer to. Ur feedback is value to me, Waiting for ur answer. Thanks a lot.Lee Su Yee __________________________________________________ Do you Yahoo!? Yahoo! Mail Plus - Powerful. Affordable. Sign up now. http://mailplus.yahoo.com _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
