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• • RE: [Biojava-l] How to create a SymbolList with a String thatcontains illegal Char mark schreiber
  • Re: [Biojava-l] How to create a SymbolList with a String thatcontains illegal Char Matthew Pocock
  • RE: [Biojava-l] How to create a SymbolList with a String thatcontains illegal Char mark schreiber
• [Biojava-l] indexdb.Record implementation Eckhard Lehmann
  • Re: [Biojava-l] indexdb.Record implementation Keith James
  • Re: [Biojava-l] indexdb.Record implementation Eckhard Lehmann
• [Biojava-l] Help! GenBank parsing problem Qin, Ying
• [Biojava-l] problem with AnnotationBuilder? Francois Pepin
  • Re: [Biojava-l] problem with AnnotationBuilder? Matthew Pocock
• [Biojava-l] issue in class Distribution Alberto Ambesi
  • Re: [Biojava-l] issue in class Distribution David Huen
  • Re: [Biojava-l] issue in class Distribution Alberto Ambesi
  • RE: [Biojava-l] issue in class Distribution Schreiber, Mark
• [Biojava-l] referencing BioJava Sohrab Shah
  • RE: [Biojava-l] referencing BioJava Schreiber, Mark
• RE: BLAST DTD (was RE: [Biojava-l] SeqSimilaritySearchSubHit - St rand information) Bobick, Stephen
  • Re: BLAST DTD (was RE: [Biojava-l] SeqSimilaritySearchSubHit -Strand information) Jan Würthner
• RE: BLAST DTD (was RE: [Biojava-l] SeqSimilaritySearchSubHit -Str and information) Bobick, Stephen
• RE: BLAST DTD (was RE: [Biojava-l] SeqSimilaritySearchSubHit -Strand information) Schreiber, Mark
• BLAST DTD (was RE: [Biojava-l] SeqSimilaritySearchSubHit - Strand information) Bobick, Stephen
  • Re: BLAST DTD (was RE: [Biojava-l] SeqSimilaritySearchSubHit - Strand information) Michael E. Smoot
• [Biojava-l] BioJava and ColdFusion Russell Smithies
• [Biojava-l] SeqSimilaritySearchSubHit - Strand information Jan Würthner
  • RE: [Biojava-l] SeqSimilaritySearchSubHit - Strand information Schreiber, Mark
• [Biojava-l] Announce: BioJava1.3.1 released Schreiber, Mark
  • [Biojava-l] Re: [Biojava-dev] Announce: BioJava1.3.1 released Matthew Pocock
• [Biojava-l] GenBank parsing problem Qin, Ying
• [Biojava-l] RE: [Biojava-dev] PhredFormat Schreiber, Mark
• [Biojava-l] PhredFormat VERHOEF Frans
• [Biojava-l] How soon can we get a book of biojava? w...@mail.cbi.pku.edu.cn
  • Re: [Biojava-l] How soon can we get a book of biojava? David Huen
• [Biojava-l] weightmatrix annotator Brian Cox
  • Re: [Biojava-l] weightmatrix annotator Tanya Vavouri
• [Biojava-l] Strang change of Location class david de beule
  • Re: [Biojava-l] Strang change of Location class Matthew Pocock
• [Biojava-l] chinese version of biojava in anger's website w...@mail.cbi.pku.edu.cn
  • RE: [Biojava-l] chinese version of biojava in anger's website Schreiber, Mark
• [Biojava-l] anger error Ben Good
  • RE: [Biojava-l] anger error Schreiber, Mark
• [Biojava-l] BioJava in the news Schreiber, Mark
• [Biojava-l] EmblFileFormer Lorna Morris
  • RE: [Biojava-l] EmblFileFormer Schreiber, Mark
• [Biojava-l] EMBL Parser Lorna Morris
• [Biojava-l] EMBLFileFormer changes Lorna Morris
• [Biojava-l] code changes to embl parser Lorna Morris
  • Re: [Biojava-l] code changes to embl parser Thomas Down
• [Biojava-l] chinese version of biojava in anger w...@mail.cbi.pku.edu.cn
• [Biojava-l] Total OBF server shutdown Saturday November 22nd (all day EDT timezone) Chris Dagdigian
• [Biojava-l] File formats Rich Heath
  • Re: [Biojava-l] File formats Matthew Pocock
  • Re: [Biojava-l] File formats Rhett Sutphin
  • RE: [Biojava-l] File formats VERHOEF Frans
• [Biojava-l] MassCalc question. Suman Kanuganti
  • RE: [Biojava-l] MassCalc question. Schreiber, Mark
• [Biojava-l] blast2html Marc Dumontier
  • Re: [Biojava-l] blast2html Colin Hardman
  • RE: [Biojava-l] blast2html Marc Dumontier
• [Biojava-l] data cleansing scoring functions bharani kumar
• [Biojava-l] Serialization of SequenceDB obtained from Swiss-Prot Vasa Curcin
  • RE: [Biojava-l] Serialization of SequenceDB obtained from Swiss-Prot Schreiber, Mark
  • Re: [Biojava-l] Serialization of SequenceDB obtained from Swiss-Prot Vasa Curcin
  • Re: [Biojava-l] Serialization of SequenceDB obtained from Swiss-Prot Matthew Pocock
• [Biojava-l] building javadocs failed Ren, Zhen
  • Re: [Biojava-l] building javadocs failed David Huen
  • RE: [Biojava-l] building javadocs failed Ren, Zhen
  • Re: [Biojava-l] building javadocs failed Matthew Pocock
• [Biojava-l] Job / Task Scheduler for Biojava (Webservice) Ralf Sigmund
  • RE: [Biojava-l] Job / Task Scheduler for Biojava (Webservice) Schreiber, Mark
  • Re: [Biojava-l] Job / Task Scheduler for Biojava (Webservice) Tom Oinn
  • Re: [Biojava-l] Job / Task Scheduler for Biojava (Webservice) Matthew Pocock
  • Re: [Biojava-l] Job / Task Scheduler for Biojava (Webservice) Tom Oinn
• [Biojava-l] BLAST parsing explodes in size VERHOEF Frans
  • Re: [Biojava-l] BLAST parsing explodes in size Keith James
  • RE: [Biojava-l] BLAST parsing explodes in size VERHOEF Frans
  • Re: [Biojava-l] BLAST parsing explodes in size Matthew Pocock
  • Re: [Biojava-l] BLAST parsing explodes in size Keith James
  • RE: [Biojava-l] BLAST parsing explodes in size VERHOEF Frans
  • RE: [Biojava-l] BLAST parsing explodes in size VERHOEF Frans
• [Biojava-l] BLAST through servlets Marc Dumontier
• [Biojava-l] Phrap ace format Schreiber, Mark
• [Biojava-l] NCBI database Vasa Curcin
  • RE: [Biojava-l] NCBI database Schreiber, Mark
• [Biojava-l] Nearing biojava 1.3.1 release Schreiber, Mark
• [Biojava-l] SequencePoster Valentin Ruano
  • Re: [Biojava-l] SequencePoster Kalle Näslund
• [Biojava-l] Dot states in SimpleMarkovModel harald malming
  • Re: [Biojava-l] Dot states in SimpleMarkovModel Matthew Pocock
• [Biojava-l] hmm profile comparison Kirill Petrov
  • RE: [Biojava-l] hmm profile comparison Schreiber, Mark
  • RE: [Biojava-l] hmm profile comparison Kirill Petrov
• [Biojava-l] Serialization of SimpleSequences Vasa Curcin
  • RE: [Biojava-l] Serialization of SimpleSequences Schreiber, Mark
  • RE: [Biojava-l] Serialization of SimpleSequences Schreiber, Mark
• [Biojava-l] Paper Hoai Sang James Truong
• [Biojava-l] problem parsing genbank files Claude Pasquier
  • [Biojava-l] Problem parsing Genbank files Fenger, Doug
• [Biojava-l] CFP: NETTAB 2003 Paolo Romano
• RE: [Biojava-l] RE: Sequence serialization exception - AlphabetManagerproblem? Schreiber, Mark
• RE: [Biojava-l] How to combine multiple Sequence objects into asingleSequence object? Schreiber, Mark
• RE: [Biojava-l] How to combine multiple Sequence objects into a singleSequence object? Schreiber, Mark
  • RE: [Biojava-l] How to combine multiple Sequence objects into asingleSequence object? Francois Pepin
  • Re: [Biojava-l] How to combine multiple Sequence objects into a singleSequence object? Keith James
  • Re: [Biojava-l] How to combine multiple Sequence objects into a singleSequence object? Matthew Pocock
  • Re: [Biojava-l] How to combine multiple Sequence objects into a singleSequence object? David Huen
  • RE: [Biojava-l] How to combine multiple Sequence objects into a singleSequence object? Daniel Kiviet
• [Biojava-l] How to combine multiple Sequence objects into a single Sequence object? Daniel Kiviet
• Re: [Biojava-l] ontology exception, addSequence & BioSQLSequenceD B Matthew Pocock
• [Biojava-l] builds Matthew Pocock
• [Biojava-l] How to code? : "code here to initialize the test sequence" erw wer
• [Biojava-l] Need help in my code erw wer
• [Biojava-l] ontology exception, addSequence & BioSQLSequenceDB Frederik Decouttere
  • Re: [Biojava-l] ontology exception, addSequence & BioSQLSequenceDB Matthew Pocock
  • Re: [Biojava-l] ontology exception, addSequence & BioSQLSequenceDB Matthew Pocock
  • Re: [Biojava-l] ontology exception, addSequence & BioSQLSequenceDB Matthew Pocock
  • Re: [Biojava-l] ontology exception, addSequence & BioSQLSequenceDB Len Trigg
  • Re: [Biojava-l] ontology exception, addSequence & BioSQLSequenceDB Len Trigg
  • Re: [Biojava-l] ontology exception, addSequence & BioSQLSequenceD B Len Trigg
  • Re: [Biojava-l] ontology exception, addSequence & BioSQLSequenceD B Matthew Pocock
  • Re: [Biojava-l] ontology exception, addSequence & BioSQLSequenceDB Matthew Pocock
• [Biojava-l] EMBL full genome retrieval Gasper Tkacik
• [Biojava-l] Connection to DAS servers Vasa Curcin
• [Biojava-l] permission to use 'BioJava in Anger' for BioRuby? KATAYAMA Toshiaki
  • RE: [Biojava-l] permission to use 'BioJava in Anger' for BioRuby? Schreiber, Mark
  • Re: [Biojava-l] permission to use 'BioJava in Anger' for BioRuby? KATAYAMA Toshiaki
• [Biojava-l] model.xml & sequence.fa allanlee
• [Biojava-l] missing API allanlee
  • RE: [Biojava-l] missing API Schreiber, Mark
• [Biojava-l] Question about Swiss-Prot parsing Vasa Curcin
  • [Biojava-l] Re: Question about Swiss-Prot parsing Eric Jain
  • RE: [Biojava-l] Question about Swiss-Prot parsing Schreiber, Mark
• [Biojava-l] mobile project required symbian
• [Biojava-l] NoClassDefException allanlee
  • RE: [Biojava-l] NoClassDefException Schreiber, Mark
• [Biojava-l] RNA Secondary Structure Torsten Waldminghaus
  • RE: [Biojava-l] RNA Secondary Structure Schreiber, Mark
• [Biojava-l] Programming hang while trying to do Profile HMM allanlee
  • Re: [Biojava-l] Programming hang while trying to do Profile HMM Matthew Pocock
• [Biojava-l] Annotation Serialization Y D Sun
  • RE: [Biojava-l] Annotation Serialization Schreiber, Mark
  • RE: [Biojava-l] Annotation Serialization Y D Sun
  • Re: [Biojava-l] Annotation Serialization Matthew Pocock
  • Re: [Biojava-l] Annotation Serialization Tom Oinn
  • RE: [Biojava-l] Annotation Serialization Y D Sun
• RE: [Biojava-l] RE: Sequence serialization exception - AlphabetManagerproblem? Schreiber, Mark
  • RE: [Biojava-l] RE: Sequence serialization exception - AlphabetManagerproblem? Mark Southern
  • RE: [Biojava-l] RE: Sequence serialization exception - AlphabetManagerproblem? Schreiber, Mark
  • RE: [Biojava-l] RE: Sequence serialization exception - AlphabetManagerproblem? Mark Southern
  • RE: [Biojava-l] RE: Sequence serialization exception - AlphabetManagerproblem? Schreiber, Mark
  • RE: [Biojava-l] RE: Sequence serialization exception - AlphabetManagerproblem? Schreiber, Mark
  • Re: [Biojava-l] RE: Sequence serialization exception - AlphabetManagerproblem? Vasa Curcin
• [Biojava-l] Sequence serialization exception Mark Southern
  • [Biojava-l] RE: Sequence serialization exception - AlphabetManager problem? Mark Southern
• [Biojava-l] Unigene and Biosql Andrew Macgregor
  • Re: [Biojava-l] Unigene and Biosql andrew
• [Biojava-l] About the six frame renderer again. hywang
  • [Biojava-l] Re: [Biojava-dev] About the six frame renderer again. Matthew Pocock
• [Biojava-l] Biojava GUI and Applets l...@cantv.net
  • Re: [Biojava-l] Biojava GUI and Applets Matthew Pocock
  • RE: [Biojava-l] Biojava GUI and Applets Schreiber, Mark
  • Re: Re: [Biojava-l] Biojava GUI and Applets l...@cantv.net
  • Re: [Biojava-l] Biojava GUI and Applets Matthew Pocock
  • [Biojava-l] Biojava GUI and applets l...@cantv.net
  • RE: [Biojava-l] Biojava GUI and applets Schreiber, Mark
  • RE: [Biojava-l] Biojava GUI and applets hz5
• [Biojava-l] http proxy w...@mail.cbi.pku.edu.cn
  • Re: [Biojava-l] http proxy Thomas Down
  • RE: [Biojava-l] http proxy Schreiber, Mark
• [Biojava-l] sequence allignment bharani kumar
• [Biojava-l] position weight matrix Brian Cox
  • RE: [Biojava-l] position weight matrix Schreiber, Mark
  • RE: [Biojava-l] position weight matrix Schreiber, Mark
  • Re: [Biojava-l] position weight matrix Matthew Pocock
  • Re: [Biojava-l] position weight matrix Matthew Pocock
• [Biojava-l] Detect seq? Suman Kanuganti
  • RE: [Biojava-l] Detect seq? Schreiber, Mark
• [Biojava-l] proxy problem w...@mail.cbi.pku.edu.cn
  • [Biojava-l] proxy problem Kenny Chamber
  • Re: [Biojava-l] proxy problem mark . schreiber
• RE: [Biojava-l] how do you run a similarity search through biojavaclasses? Schreiber, Mark
• [Biojava-l] BioJava GUI and applets question l...@cantv.net
  • Re: [Biojava-l] BioJava GUI and applets question Matthew Pocock
• [Biojava-l] how do you run a similarity search through biojava classes? Alberto Ambesi
• [Biojava-l] Simple alignment Emig, Robin
  • RE: [Biojava-l] Simple alignment Schreiber, Mark
  • Re: [Biojava-l] Simple alignment Matthew Pocock
  • RE: [Biojava-l] Simple alignment Emig, Robin
  • Re: [Biojava-l] Simple alignment Matthew Pocock
  • RE: [Biojava-l] Simple alignment Michael Heuer
  • Re: [Biojava-l] Simple alignment Matthew Pocock
• [Biojava-l] Build errors Andy Hammer
  • Re: [Biojava-l] Build errors Matthew Pocock
  • RE: [Biojava-l] Build errors Schreiber, Mark
  • [Biojava-l] Build errors Andy Hammer
  • [Biojava-l] Build errors Andy Hammer
  • [Biojava-l] Build errors Andy Hammer
  • Re: [Biojava-l] Build errors Matthew Pocock
  • [Biojava-l] Build errors Andy Hammer
• [Biojava-l] Performance of SymbolList.subStr() function Andy Hammer
  • RE: [Biojava-l] Performance of SymbolList.subStr() function Schreiber, Mark
• [Biojava-l] HELP: Relative URI "NCBI_BlastOutput.dtd"; can not be resolved without a base URI. Yong Liu

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