Hi, I enjoyed using the biojava.org api for parsing the blast output. I discover that sometimes there's html markup in the blast output e.g. in entry ref|NP_012821.1. The problem is that the markup is included when BlastLikeToXMLConverter converts the data to xml. The markup tags don't always match because of truncation in the blast output and that invalidates the xml files.
Question: is there a way to filter the markup out upon parsing? Or do I need to do a pre-run deleting any markup? Thanks, Jurgen --- Jurgen F. Doreleijers, Ph.D. CESG/BMRB, Univ. of Wisconsin-Madison, WI, USA mailto:[EMAIL PROTECTED] _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
