On Wed, Jan 08, 2003 at 09:28:37AM +1300, Schreiber, Mark wrote: > Hi - > > If you already have the SimpleGene features constructed these will > contain a Location object. However, I think you are saying how can I > find a subsequence in my Genomic sequence and locate the gene that way? > > To rapidly find exact matches you can use the biojava > KnuthMorrisPrattSearch object from the org.biojava.bio.search package. > It contains a main method that demonstrates it's use. This is a very > efficient algorithm for finding exact matches.
Thankyou for your help. However, I seem to have a different version of biojava than you, since I cannot find that class in that package (and not in none of the others either). The biojava I am using is version 1.22 downloaded from biojava.org. I did however discover a KnuthMorrisPrattSearch in a biojava API at http://rosetteer.icu.ac.kr/, however, I could not figure out how to get at the actual class.... Am I missing something again? Karin -- Karin Lagesen, PhD student [EMAIL PROTECTED] _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
