Hello Matthew or Thomas, I just use SAX BLAST parser to parse a massive of BLAST output. Unfortunately this package does a really poor job in a batch mode. It runs out of memory because of the recursive self-calls which adversely affects the heap. I know that you have borrowed this from another team, but are there any ways to fix it, outherwise I run into strange situation while parsing 18,000 Blast runs. Sincerely,
Alexander Churbanov __________________________________________________ Do you Yahoo!? Yahoo! Mail Plus - Powerful. Affordable. Sign up now. http://mailplus.yahoo.com _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
