Hi!
I'm a graduate student and I'm using biojava to implement Viterbi training algorithm.
I spent some time digging in the code, but I still can't make the relation between
TrainigAlgorithm, DistributionTrainer, etc...
What are the key classes that I can use? How does it work? I tried to look at
BaumWelchTrainer, but it didn't make sense how I would implement Viterbi Trainig.
Besides, I kept getting confused with DistributionTrainer and DistributionTrainerContext...
Can anybody help me?? It would be nice if someone explain to me how the whole thing works.
Hi !
Have you found the tutorial about one of the dynamic programming examples included in biojava ?
The tutorial is about an HMM setup, and shows how to set it all up and use it. It can be found at
http://www.biojava.org/tutorials/dp-doc.html
Hopefully this will atleast get you started.
mvh Kalle
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