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• • RE: [Biojava-l] Biojava uses which BioSQL shema version ? Alexandre Dionne Laporte
• [Biojava-l] Blast2HTML parser problem elenges
• [Biojava-l] Network visualization and biojava? Dan Bolser
• [Biojava-l] BioSQL transaction control mark . schreiber
  • Re: [Biojava-l] BioSQL transaction control Thomas Down
  • Re: [Biojava-l] BioSQL transaction control mark . schreiber
• [Biojava-l] CFP: The Seventh Annual Bio-ontologies Meeting Phillip Lord
• Re: CircularLocations (was Re: [Biojava-l] Re: [Biojava-dev] Feature at position 0) mark . schreiber
• [Biojava-l] Extending the default SAX handlers Tracy, Adam
• [Biojava-l] Re: [Biojava-dev] Feature at position 0 Matthew Pocock
  • [Biojava-l] Re: [Biojava-dev] Feature at position 0 Thomas Down
  • CircularLocations (was Re: [Biojava-l] Re: [Biojava-dev] Feature at position 0) Bradford Powell
  • [Biojava-l] Re: [Biojava-dev] Feature at position 0 Tao Xu
• [Biojava-l] accessing the HSP alignment using biojava Tracy, Adam
• [Biojava-l] SimpleGappedSymbolList from a String Don Naki
  • Re: [Biojava-l] SimpleGappedSymbolList from a String Matthew Pocock
  • Re: [Biojava-l] SimpleGappedSymbolList from a String Don Naki
• [Biojava-l] Dazzle 1.01 Thomas Down
• [Biojava-l] testing a new Open-Bio website and mail list archive search Chris Dagdigian
  • [Biojava-l] Re: [Bioperl-l] testing a new Open-Bio website and mail list archive search Hilmar Lapp
• [Biojava-l] Highlight Features when clicked? newbie Maximilian Haeussler
  • Re: [Biojava-l] Highlight Features when clicked? newbie Matthew Pocock
• [Biojava-l] {off topic} Apple is giving away 5 workgroup sized clusters in a program for bioinformatics researchers Chris Dagdigian
• [Biojava-l] Why is FramedFeature.Template.readingFrame static? Bradford Powell
  • Re: [Biojava-l] Why is FramedFeature.Template.readingFrame static? Thomas Down
  • Re: [Biojava-l] Why is FramedFeature.Template.readingFrame static? Thomas Down
• [Biojava-l] Locations in centiMorgans VERHOEF Frans
• [Biojava-l] SequencePoster <-> SequencePanel Maximilian Haeussler
  • Re: [Biojava-l] SequencePoster <-> SequencePanel Matthew Pocock
  • Re: [Biojava-l] SequencePoster <-> SequencePanel Kalle Näslund
  • Re: [Biojava-l] SequencePoster <-> SequencePanel Kalle Näslund
  • Re: [Biojava-l] SequencePoster <-> SequencePanel Maximilian Haeussler
• [Biojava-l] Alignment/ Alphabet issues (was biojava v2 alpha1 release) mark . schreiber
• [Biojava-l] Website updates Thomas Down
  • Re: [Biojava-l] Website updates Thomas Down
  • RE: [Biojava-l] Website updates VERHOEF Frans
• [Biojava-l] Biojava goes 3D Andreas Prlic
• [Biojava-l] BOSC 2nd Call For Papers (fwd) Darin London
• [Biojava-l] biojava survey Matthew Pocock
• [Biojava-l] Bioinfo book review Smithies, Russell
• [Biojava-l] blast parser alignment middle line Christian Gruber
  • [Biojava-l] bioperl graph - different glyph on the same track hz5
• [Biojava-l] How to pull out the detailed information in Genbank feature table Gang Wu
  • RE: [Biojava-l] How to pull out the detailed information in Genbankfeature table Gang Wu
• [Biojava-l] RestrictionEnzymeManager Khalil El Mazouari
• [Biojava-l] Blast Parser oddity Christian Gruber
  • RE: [Biojava-l] Blast Parser oddity Wiepert, Mathieu
• [Biojava-l] Anybody working on a Java binding to CHADO? Richard Bruskiewich
  • Re: [Biojava-l] Anybody working on a Java binding to CHADO? David Huen
• [Biojava-l] Dazzle 1.00 release Thomas Down
• [Biojava-l] Parsing GenBank files in Threads Hoebeke Mark
  • Re: [Biojava-l] Parsing GenBank files in Threads Matthew Pocock
  • Re: [Biojava-l] Parsing GenBank files in Threads Hoebeke Mark
  • Re: [Biojava-l] Parsing GenBank files in Threads Hoebeke Mark
• [Fwd: Re: [Biojava-l] LabelledSequenceRenderer does not work with TranslatedSequenceRenderer, Newbie] Kalle Näslund
  • [Biojava-l] Re: Speed TranslatedSequenceRenderer Maximilian Haeussler
  • Re: [Fwd: Re: [Biojava-l] Displaying many SequencePanels Maximilian Haeussler
  • Re: [Fwd: Re: [Biojava-l] Displaying many SequencePanels Kalle Näslund
• [Biojava-l] how to get renderer in SequencePanel Magic Fang
• [Biojava-l] what is the design goal of biojava? Magic Fang
  • Re: [Biojava-l] what is the design goal of biojava? Matthew Pocock
  • Re: [Biojava-l] what is the design goal of biojava? mark . schreiber
• [Biojava-l] biojava script? Dan Bolser
• [Biojava-l] LabelledSequenceRenderer does not work with TranslatedSequenceRenderer, Newbie Maximilian Haeussler
  • Re: [Biojava-l] LabelledSequenceRenderer does not work with TranslatedSequenceRenderer, Newbie Kalle Näslund
  • Re: [Biojava-l] LabelledSequenceRenderer does not work with TranslatedSequenceRenderer, Newbie Matthew Pocock
  • Re: [Biojava-l] LabelledSequenceRenderer does not work with TranslatedSequenceRenderer, Newbie Keith James
  • Re: [Biojava-l] LabelledSequenceRenderer does not work with TranslatedSequenceRenderer, Newbie Keith James
  • Re: [Biojava-l] LabelledSequenceRenderer does not work with TranslatedSequenceRenderer, Newbie David Huen
  • Re: [Biojava-l] LabelledSequenceRenderer does not work with TranslatedSequenceRenderer, Newbie Matthew Pocock
  • Re: [Biojava-l] LabelledSequenceRenderer: OutofBounds exception on window resize Maximilian Haeussler
• [Biojava-l] cvs.biojava.org down? Christian Gruber
• [Biojava-l] is blast parser flawed? Magic Fang
  • Re: [Biojava-l] is blast parser flawed? mark . schreiber
• [Biojava-l] Missing ProcessTools class Christian Gruber
  • Re: [Biojava-l] Missing ProcessTools class mark . schreiber
• [Biojava-l] BioJava mentioned in 'on java' article mark . schreiber
• [Biojava-l] yes, something like this Magic Fang
  • Re: [Biojava-l] yes, something like this mark . schreiber
  • Re: [Biojava-l] yes, something like this Matthew Pocock
  • Re: [Biojava-l] yes, something like this Michael Heuer
  • Re: [Biojava-l] yes, something like this Magic Fang
  • Re: [Biojava-l] yes, something like this Michael Heuer
• [Biojava-l] is there a biojava class diagram? like bioperl diagram Magic Fang
  • Re: [Biojava-l] is there a biojava class diagram? like bioperl diagram mark . schreiber
• Re: [Biojava-l] Parameter Settings in BaumWelchTraining] sacoca
  • Re: [Biojava-l] Parameter Settings in BaumWelchTraining] mark . schreiber
  • Re: [Biojava-l] Parameter Settings in BaumWelchTraining] Dan Bolser
  • Re: [Biojava-l] Parameter Settings in BaumWelchTraining] Thomas Down
  • Re: [Biojava-l] Parameter Settings in BaumWelchTraining] mark . schreiber
• [Biojava-l] Parameter Settings in BaumWelchTraining sacoca
  • Re: [Biojava-l] Parameter Settings in BaumWelchTraining mark . schreiber
  • Re: [Biojava-l] Parameter Settings in BaumWelchTraining sacoca
• [Biojava-l] BlastXMLParserFacade DMGoodstein
  • Re: [Biojava-l] BlastXMLParserFacade Matthew Pocock
  • Re: [Biojava-l] BlastXMLParserFacade David Huen
  • Re: [Biojava-l] BlastXMLParserFacade Thomas Down
  • Re: [Biojava-l] BlastXMLParserFacade Dan Bolser
• [Biojava-l] O|B|F mail update -- making progress on anti-spam issues with our mailing lists Chris Dagdigian
• [Biojava-l] BJIA updates mark . schreiber
• [Biojava-l] Reading frames and amino acids Jellema, Gera
  • Re: [Biojava-l] Reading frames and amino acids mark . schreiber
  • Re: [Biojava-l] Reading frames and amino acids Dan Bolser
  • Re: [Biojava-l] Reading frames and amino acids mark . schreiber
  • [Biojava-l] Reading frames and amino acids facemann
  • Re: [Biojava-l] Reading frames and amino acids mark . schreiber
  • RE: [Biojava-l] Reading frames and amino acids Jellema, Gera
  • Re: [Biojava-l] Reading frames and amino acids David Huen
• [Biojava-l] NPE from FlatModel.<init> with SimpleModelInState Douglas Hoen
  • [Biojava-l] NPE from FlatModel.<init> with SimpleModelInState fabian schreiber
• [Biojava-l] Bug in biojava GUI? [email protected]
  • Re: [Biojava-l] Bug in biojava GUI? Matthew Pocock
• [Biojava-l] Hard Times using File Inputs for HMM Package sacoca
  • Re: [Biojava-l] Hard Times using File Inputs for HMM Package mark . schreiber
• RE: [Biojava-l] Intsall Problems Update Orion Hunter
  • Re: [Biojava-l] Intsall Problems Update David Huen
  • Re: [Biojava-l] Intsall Problems Update Orion Hunter
  • Re: [Biojava-l] Intsall Problems Update mark . schreiber
• [Biojava-l] Intsall Problems Orion Hunter
  • RE: [Biojava-l] Intsall Problems Orion Hunter
• [Biojava-l] ask help in biojava GUI [email protected]
  • Re: [Biojava-l] ask help in biojava GUI Keith James
  • Re: [Biojava-l] ask help in biojava GUI Matthew Pocock
• Re: [Biojava-l] how to make a subsequence serializable? mark . schreiber
  • [Biojava-l] how to make a subsequence serializable? Alberto Ambesi
• [Biojava-l] Serialization of RemoteFeature.Region Vasa Curcin
• [Biojava-l] DNA 'weak' comparison Jan Würthner
  • Re: [Biojava-l] DNA 'weak' comparison mark . schreiber
• [Biojava-l] can i download the demos code, the tutorial is somewhat limited Magic Fang
  • Re: [Biojava-l] can i download the demos code, the tutorial is somewhat limited mark . schreiber
  • [Biojava-l] Biojava development help needed? Sulatycki Rohini
• Re: [Biojava-l] removeGap problem with SimpleGappedSequence mark . schreiber
  • Re: [Biojava-l] removeGap problem with SimpleGappedSequence daviddebeule
  • Re: [Biojava-l] removeGap problem with SimpleGappedSequence mark . schreiber
  • Re: [Biojava-l] removeGap problem with SimpleGappedSequence Matthew Pocock
  • Re: [Biojava-l] removeGap problem with SimpleGappedSequence david de beule
• [Biojava-l] Experience with Phred base calling on Beckman CEQ 2000? david atlan (PHENO)
• Re: [Biojava-l] 2 problems found in org.biojava.bio.seq.db.biosql code mark . schreiber
  • Re: [Biojava-l] 2 problems found in org.biojava.bio.seq.db.biosql code Len Trigg
• Re: [Biojava-l] TMTOWTDI in biojava? mark . schreiber
• [Biojava-l] BLASTLikeSAXParser and HMMER Iris Pallida
  • Re: [Biojava-l] BLASTLikeSAXParser and HMMER mark . schreiber
• [Biojava-l] Run blast on multiple databases Laurence Hummel
  • Re: [Biojava-l] Run blast on multiple databases Patrick McConnell
• [Biojava-l] blast on multiple databases Laurence Hummel
• [Biojava-l] tipical dumb user problem (BUILD FAILED) Dan Bolser
  • Re: [Biojava-l] tipical dumb user problem (BUILD FAILED) Thomas Down
  • Re: [Biojava-l] tipical dumb user problem (BUILD FAILED) Dan Bolser
• [Biojava-l] beginners bug fileToBiojava problem with msf format Dan Bolser
  • Re: [Biojava-l] beginners bug fileToBiojava problem with msf format Dan Bolser
  • Re: [Biojava-l] beginners bug fileToBiojava problem with msf format Keith James
  • Re: [Biojava-l] beginners bug fileToBiojava problem with msf format Dan Bolser
  • Re: [Biojava-l] beginners bug fileToBiojava problem with msf format Keith James
  • [Biojava-l] TMTOWTDI in biojava? Dan Bolser
  • Re: [Biojava-l] beginners bug fileToBiojava problem with msf format Keith James
  • RE: [Biojava-l] beginners bug fileToBiojava problem with msf format VERHOEF Frans
• [Biojava-l] Uppercase/lowercase sequences Maik Hassel
  • Re: [Biojava-l] Uppercase/lowercase sequences mark . schreiber
• Hello biojava-l
• [Biojava-l] creating a sequence... Jan Würthner
  • Re: [Biojava-l] creating a sequence... Jan Würthner
• [Biojava-l] GenBank Feature Extraction Toralf Kirsten
  • Re: [Biojava-l] GenBank Feature Extraction mark . schreiber
  • Re: [Biojava-l] GenBank Feature Extraction Toralf Kirsten
  • [Biojava-l] 2 problems found in org.biojava.bio.seq.db.biosql code Frederik Decouttere
  • Re: [Biojava-l] 2 problems found in org.biojava.bio.seq.db.biosql code Len Trigg
• hcmv biojava-l
• [Biojava-l] GenBank XML File Parse Error Toralf Kirsten
  • Re: [Biojava-l] GenBank XML File Parse Error Thomas Down
  • Re: [Biojava-l] GenBank XML File Parse Error Toralf Kirsten
• [Biojava-l] Blast XML output question tai kwan do
• [Biojava-l] ClassCastException during ambiguity calcul Eric BELLARD
  • Re: [Biojava-l] ClassCastException during ambiguity calcul mark . schreiber
• [Biojava-l] Non-Deterministic behaviour of the FeatureFilter-Walker !? Benjamin Schuster-Boeckler
• [Biojava-l] how to calculate consensus from a fasta file Eric BELLARD
  • Re: [Biojava-l] how to calculate consensus from a fasta file mark . schreiber
  • Re: [Biojava-l] how to calculate consensus from a fasta file Eric BELLARD
• [Biojava-l] wanted info ! karla suri nath
  • Re: [Biojava-l] wanted info ! mark . schreiber
• [Biojava-l] seqString() produces stacktrace david de beule
  • Re: [Biojava-l] seqString() produces stacktrace mark . schreiber
  • Re: [Biojava-l] seqString() produces stacktrace Matthew Pocock
• [Biojava-l] I get an IndexOutOfBoundsException with visitFilter in WalkerFactory Benjamin Schuster-Boeckler
  • Re: [Biojava-l] I get an IndexOutOfBoundsException with visitFilter in WalkerFactory Benjamin Schuster-Boeckler
• [Biojava-l] Is there a way to determine the query within a FeatureFilter? Benjamin Schuster-Boeckler
  • Re: [Biojava-l] Is there a way to determine the query within a FeatureFilter? Benjamin Schuster-Boeckler
  • Re: [Biojava-l] Is there a way to determine the query within a FeatureFilter? Thomas Down
  • Re: [Biojava-l] Is there a way to determine the query within a FeatureFilter? Matthew Pocock
• [Biojava-l] biojava doubts and problems nandakumar sridharan
  • Re: [Biojava-l] biojava doubts and problems David Huen
  • [Biojava-l] removeGap problem with SimpleGappedSequence david de beule
• [Biojava-l] Blast Version Y D Sun
  • RE: [Biojava-l] Blast Version DeAngelo Lampkin
• [Biojava-l] PubMed Query Alexandre Irrthum
• [Biojava-l] OutOfMemoryError with huge sequence flatfile Benjamin Schuster-Boeckler
• [Biojava-l] About com.kizna.html divol
• [Biojava-l] sanger das martin
• RE: [Biojava-l] How to create a SymbolList with a String that containsillegal Char VERHOEF Frans
• [Biojava-l] How to create a SymbolList with a String that contains illegal Char Tao Xu
  • Re: [Biojava-l] How to create a SymbolList with a String that contains illegal Char David Huen

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