Once upon a time, Y D Sun wrote:
> Dear all,
>
> Is there a method in BioJava that returns a sub-sequence using a
> Location parameter (not subStr() or subList() with two integers - start
> and end)? This consideration comes from my requirement to get the
> nucleotide sub-sequence corresponding to a CDS section. In such a case,
> the subStr(start, end) method cannot always return the sub-sequence
> correctly.
Location cdsLocation = ...
Sequence seq = ...
SymbolList cdsSymbols = cdsLocation.symbols(seq);
Alternatively, if you've created a Feature for the CDS you're
interested in, you can just use the getSymbols() method on
that.
Thomas.
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