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• • Re: [Biojava-l] grouped features using dazzle GFFAnnotationSource Thomas Down
  • Re: [Biojava-l] reading nib sequence files mark . schreiber
  • RE: [Biojava-l] reading nib sequence files Richard HOLLAND
  • RE: [Biojava-l] reading nib sequence files mark . schreiber
  • RE: [Biojava-l] reading nib sequence files Richard HOLLAND
  • RE: [Biojava-l] reading nib sequence files mark . schreiber
  • Re: [Biojava-l] reading nib sequence files Thomas Down
  • RE: [Biojava-l] reading nib sequence files Richard HOLLAND
  • RE: [Biojava-l] reading nib sequence files VERHOEF Frans
  • Re: [Biojava-l] reading nib sequence files mark . schreiber
  • RE: [Biojava-l] reading nib sequence files Richard HOLLAND
  • RE: [Biojava-l] reading nib sequence files Smithies, Russell
  • Re: [Biojava-l] reading nib sequence files Dan Baggott
  • Re: [Biojava-l] reading nib sequence files mark . schreiber
• [Biojava-l] IllegalArgumentException when parsing an embl file Anna Henricson
  • Re: [Biojava-l] IllegalArgumentException when parsing an embl file mark . schreiber
  • Re: [Biojava-l] IllegalArgumentException when parsing an embl file Kalle Näslund
• [Biojava-l] SequencePanel changes between 1.3 and 1.4pre1 Mark Southern
• [Biojava-l] Biojava DB Ola Spjuth
  • Re: [Biojava-l] Biojava DB mark . schreiber
• [Biojava-l] 3D viewing? Egon Willighagen
  • Re: [Biojava-l] 3D viewing? Andreas Prlic
  • Re: [Biojava-l] 3D viewing? Tom Oinn
  • Re: [Biojava-l] 3D viewing? Egon Willighagen
  • Re: [Biojava-l] 3D viewing? Tom Oinn
  • Re: [Biojava-l] 3D viewing? Egon Willighagen
  • Re: [Biojava-l] 3D viewing? Andreas Prlic
  • Re: [Biojava-l] 3D viewing? Egon Willighagen
  • [Biojava-l] biosql support in bioperl? Michael Heuer
• [Biojava-l] can use biojava in JApplet? Guanhong Hu
  • RE: [Biojava-l] can use biojava in JApplet? Richard HOLLAND
• [Biojava-l] BioJava 1.5 Wim Glassee
  • Re: [Biojava-l] BioJava 1.5 mark . schreiber
• [Biojava-l] Is there a BioJava wrapper for Consensus Wuming Gong
• [Biojava-l] Blast SAX parser output Richard HOLLAND
  • Re: [Biojava-l] Blast SAX parser output mark . schreiber
• [Biojava-l] CVS Felipe Albrecht
  • Re: [Biojava-l] CVS mark . schreiber
• [Biojava-l] Exception not being caught. Richard HOLLAND
  • Re: [Biojava-l] Exception not being caught. Michael Heuer
  • RE: [Biojava-l] Exception not being caught. Richard HOLLAND
  • RE: [Biojava-l] Exception not being caught. mark . schreiber
• [Biojava-l] Exception handling Richard HOLLAND
  • Re: [Biojava-l] Exception handling mark . schreiber
• [Biojava-l] Adapting org.biojava.bio.seq classes to an interface? Christian Storm
  • Re: [Biojava-l] Adapting org.biojava.bio.seq classes to an interface? Thomas Down
  • Re: [Biojava-l] Adapting org.biojava.bio.seq classes to an interface? Christian Storm
  • [Biojava-l] Adapting org.biojava.bio.seq classes to an interface? Christian Storm
• [Biojava-l] Recent additions to BJIA mark . schreiber
• [Biojava-l] Genpept format - missing features Christian Storm
• AW: [Biojava-l] Parse Genbank file BIBIS, Garnier, Christophe
  • Re: AW: [Biojava-l] Parse Genbank file Andy Yates
• [Biojava-l] Parse Genbank file Xingen Zhu
• [Biojava-l] Fix to org.biojava.bio.seq.db.biosql.OntologySQL Richard HOLLAND
• [Biojava-l] Ontology and BioSQL Richard HOLLAND
  • Re: [Biojava-l] Ontology and BioSQL mark . schreiber
  • RE: [Biojava-l] Ontology and BioSQL Richard HOLLAND
  • Re: [Biojava-l] Ontology and BioSQL Thomas Down
  • RE: [Biojava-l] Ontology and BioSQL Richard HOLLAND
  • RE: [Biojava-l] Ontology and BioSQL Richard HOLLAND
  • [Biojava-l] Ontology and BioSQL Richard HOLLAND
• [Biojava-l] Parsing an EMBL flatfile Anna Henricson
  • Re: [Biojava-l] Parsing an EMBL flatfile mark . schreiber
• [Biojava-l] biojava and microArray:::::::::Proget gregory voisin
  • Re: [Biojava-l] biojava and microArray:::::::::Proget Michael Heuer
• [Biojava-l] 3D Dot Matrix for sequence similarity smitha kantipudi
• [Biojava-l] Re: Biojava query mark . schreiber
• [Biojava-l] Writing EMBL files Vasa Curcin
• [Biojava-l] Exception found in GenbankSequenceDB -- getSequence Johnny Hujol
• [Biojava-l] Parsing MegaBLAST output files? James Diggans
  • Re: [Biojava-l] Parsing MegaBLAST output files? mark . schreiber
  • Re: [Biojava-l] Parsing MegaBLAST output files? James Diggans
• [Biojava-l] Errors to STDOUT in BioJava? James Diggans
  • RE: [Biojava-l] Errors to STDOUT in BioJava? j vermont
  • Re: [Biojava-l] Errors to STDOUT in BioJava? James Diggans
  • Re: [Biojava-l] Errors to STDOUT in BioJava? Thomas Down
• [Biojava-l] TestDAS problem Dirk Habighorst
  • Re: [Biojava-l] TestDAS problem Thomas Down
• [Biojava-l] opening unknown fasta file Koen van der Drift
  • Re: [Biojava-l] opening unknown fasta file Mark A Fortner
  • Re: [Biojava-l] opening unknown fasta file mark . schreiber
  • Re: [Biojava-l] opening unknown fasta file Thomas Down
  • Re: [Biojava-l] opening unknown fasta file j vermont
  • Re: [Biojava-l] opening unknown fasta file mark . schreiber
• [Biojava-l] biojava and Xcode Koen van der Drift
  • Re: [Biojava-l] biojava and Xcode Michael Heuer
  • Re: [Biojava-l] biojava and Xcode Francois Pepin
  • Re: [Biojava-l] biojava and Xcode Thomas Down
  • Re: [Biojava-l] biojava and Xcode Koen van der Drift
  • Re: [Biojava-l] biojava and Xcode Koen van der Drift
  • Re: [Biojava-l] biojava and Xcode Thomas Down
  • Re: [Biojava-l] biojava and Xcode Koen van der Drift
  • [Biojava-l] Ravi Choudari
  • Re: [Biojava-l] biojava and Xcode mark . schreiber
• [Biojava-l] Parsing blast result with a lot of hit Lu Qiang
  • Re: [Biojava-l] Parsing blast result with a lot of hit Rahul Karnik
  • Re: [Biojava-l] Parsing blast result with a lot of hit mark . schreiber
  • RE: [Biojava-l] Parsing blast result with a lot of hit PhxGM Gim
• [Biojava-l] Navigating a Vector Ng, Peter
  • Re: [Biojava-l] Navigating a Vector mark . schreiber
  • Re: [Biojava-l] Navigating a Vector Rahul Karnik
  • Re: [Biojava-l] Navigating a Vector Francois Pepin
• [Biojava-l] Parsing a huge Blast File with Biojava Can Gencer
  • Re: [Biojava-l] Parsing a huge Blast File with Biojava David Huen
  • Re: [Biojava-l] Parsing a huge Blast File with Biojava Thomas Down
• [Biojava-l] parsing EMBL files Lorna Morris
  • Re: [Biojava-l] parsing EMBL files mark . schreiber
  • Re: [Biojava-l] parsing EMBL files Lorna Morris
• [Biojava-l] Clustering services Carlos Montemuiño
  • Re: [Biojava-l] Clustering services mark . schreiber
• [Biojava-l] BioSQL mark . schreiber
  • Re: [Biojava-l] BioSQL Len Trigg
  • [Biojava-l] BioSQL David Lapointe
  • Re: [Biojava-l] BioSQL David Huen
• [Biojava-l] Per-sequence information from PairwiseAlignment Rahul Karnik
  • Re: [Biojava-l] Per-sequence information from PairwiseAlignment mark . schreiber
• [Biojava-l] Questions about simple alignment MoonTigress Chiko
• [Biojava-l] Base Calling mark . schreiber
• [Biojava-l] viewsequence is unchangeable? Maximilian Haussler
  • Re: [Biojava-l] viewsequence is unchangeable? Kalle Näslund
  • Re: [Biojava-l] viewsequence is unchangeable? Kalle Näslund
  • Re: [Biojava-l] viewsequence is unchangeable? mark . schreiber
• [Biojava-l] Unexpected IllegalSymbolException Ashwin Hajarnavis
• [Biojava-l] too much spam Matthew Pocock
  • Re: [Biojava-l] too much spam mark . schreiber
• [Biojava-l] Getting Started Joe Davison
  • Re: [Biojava-l] Getting Started mark . schreiber
• [Biojava-l] SeqHound release v3.0 now available Ian Donaldson
• [Biojava-l] biojava presentation mark . schreiber
• [Biojava-l] Virtual Conference on Genomics and Bioinformatics willy_valdivia
• [Biojava-l] old webpage Maximilian Haussler
• [Biojava-l] Update of BioJava In Anger-Japanese mark . schreiber
• [Biojava-l] multiple sequence alignments katikaneni avinash rao
• [Biojava-l] Sequence IO mmatilai
• [Biojava-l] GenBank files and weight matrices mmatilai
• [Biojava-l] SeqIOTools.readSwissprot API Fard, Payam (NIH/NCI)
• [Biojava-l] Sun Developer Newsletter demonstrates NCBI SOAP Smithies, Russell
• Re: [Biojava-l] got identity? mark . schreiber
• [Biojava-l] Blast XML Nicholas Stiffler
• [Biojava-l] failed to read genbank peptide file Hongyu Zhang
  • [Biojava-l] got identity? Hongyu Zhang
  • [Biojava-l] failed to read genbank peptide file Bruno Aranda - Dev
  • Re: [Biojava-l] failed to read genbank peptide file Hongyu Zhang
  • Re: [Biojava-l] failed to read genbank peptide file Hongyu Zhang
• [Biojava-l] GenBankXML mark . schreiber
  • Re: [Biojava-l] GenBankXML Thomas Down
• [Biojava-l] removeFeature() in SimpleGappedSequence daviddebeule
  • Re: [Biojava-l] removeFeature() in SimpleGappedSequence Thomas Down
  • Re: [Biojava-l] removeFeature() in SimpleGappedSequence Thomas Down
• [Biojava-l] Best match with missmatches mark . schreiber
• [Biojava-l] Parsing ClustalW Alignments Alexandre Dionne Laporte
• [Biojava-l] Chou-Fasman mark . schreiber
• [Biojava-l] Regular expressions Nicholas Lee Stiffler
  • Re: [Biojava-l] Regular expressions David Huen
• [Biojava-l] FW: [eutilities] Retrieving brief summaries for gene names with SOAP Smithies, Russell
• [Biojava-l] chromosome ideogram drawing program written in biojava or java Jai-wei Gan
• [Biojava-l] NCBI SOAP interface Smithies, Russell
  • [Biojava-l] NCBI SOAP interface Bruno Aranda - Dev
• [Biojava-l] Problems getting started mmatilai
  • Re: [Biojava-l] Problems getting started Matthew Pocock
• [Biojava-l] PFAM parser mark . schreiber
  • re: [Biojava-l] PFAM parser Lachlan James Coin
• [Biojava-l] java.lang.NoClassDefFoundError error Selmar Leeuwenburgh
  • RE: [Biojava-l] java.lang.NoClassDefFoundError error Gang Wu
  • RE: [Biojava-l] java.lang.NoClassDefFoundError error Gang Wu
  • Re: [Biojava-l] java.lang.NoClassDefFoundError error Francois Pepin
  • RE: [Biojava-l] java.lang.NoClassDefFoundError error Selmar Leeuwenburgh
• [Biojava-l] DistributionLogo help xjw2101
  • Re: [Biojava-l] DistributionLogo help Thomas Down
  • Re: [Biojava-l] DistributionLogo help xjw2101
  • Re: [Biojava-l] DistributionLogo help Thomas Down
  • Re: [Biojava-l] DistributionLogo help xjw2101
• [Biojava-l] Java VM performance. Smithies, Russell
• [Biojava-l] biojava article Matthew Pocock
• [Biojava-l] Symbol to Token? Thorsten
  • Re: [Biojava-l] Symbol to Token? Thorsten
  • Re: [Biojava-l] Symbol to Token? mark . schreiber
  • [Biojava-l] BioSQL successes, failures and questions Gang Wu
• [Biojava-l] reading sequence files Clemens Steegborn
  • Re: [Biojava-l] reading sequence files mark . schreiber
  • Re: [Biojava-l] reading sequence files Clemens Steegborn
• [Biojava-l] BioJava, BioSQL versions Gang Wu
  • Re: [Biojava-l] BioJava, BioSQL versions mark . schreiber
  • RE: [Biojava-l] BioJava, BioSQL versions Gang Wu
  • Re: [Biojava-l] BioJava, BioSQL versions Len Trigg
  • RE: [Biojava-l] BioJava, BioSQL versions Gang Wu
• [Biojava-l] Heat map gradients mark . schreiber
  • Re: [Biojava-l] Heat map gradients Dan Bolser
  • Re: [Biojava-l] Heat map gradients Thomas Down
  • Re: [Biojava-l] Heat map gradients Dan Bolser
  • Re: [Biojava-l] Heat map gradients Patrick McConnell
• [Biojava-l] Genome Informatics meeting. Ewan Birney
• [Biojava-l] Exporting accessions to Genbank files Hoebeke Mark
• [Biojava-l] BioSQL exception Gang Wu
• [Biojava-l] Genbank ASN.1 or XML parser Gang Wu
  • Re: [Biojava-l] Genbank ASN.1 or XML parser mark . schreiber
  • RE: [Biojava-l] Genbank ASN.1 or XML parser Gang Wu
  • RE: [Biojava-l] Genbank ASN.1 or XML parser mark . schreiber
• [Biojava-l] BioJava 1.4pre1 Thomas Down
• [Biojava-l] Biojava uses which BioSQL shema version ? Alexandre Dionne Laporte

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