On Thu, 10 Jul 2003, DeAngelo Lampkin wrote: > > >I would strongly recommend using the BlastXMLParserFacade class instead of > >the BlastXMLParser class unless setting up StAX parsers appeals to you. > >There is a demo of the use of the latter in the biojava-live repository. > > I looked everywhere for BlastXMLParserFacade, but I couldn't find it. Do you happen > to recall which package it sits in? > > Also, I'm not really sure how to go about using the StAX stuff. For the time being, > I'll just create my own data structures using vanilla SAX. > Ah, OK, I begin to see the problem. I would recommend that you use the biojava-live version straight from CVS. While that is the development version, it also has the latest stuff and fixes in it.
BlastXMLParserFacade was introduced last month to give a uniform method of use between the XML and the text parsing frameworks. A demo was also uploaded to show its use. This was in response to some queries as to use of this package. You can work out how to use the CVS here:- http://cvs.biojava.org/ The module you want is biojava-live from the biojava repository. I think you can also use WebCVS to download it:- http://cvs.biojava.org/cgi-bin/viewcvs/viewcvs.cgi/biojava-live/?cvsroot=biojava I suspect that clicking "Download tarball" here will create you a tarball of the sources. I don't know if it will include the CVS directories that will allow you to use CVS to resync with the latest sources later. To compile the sources, you will want the Ant package from the Apache Jakarta team (jakarta.apache.org). That must be installed to compile. When you have all that working, going into the biojava-live directory and type:- ant and it will compile and create th biojava.jar for you wihtin the ant-build directory somewhere. ant javadocs will make the javadocs Personally, I would rather go for the command line version and set it up once. Thereafter you can track the bleeding edge by typing cvs update -d and having it sync with the current repository. Rgds, DH _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
