Hi, I am aligning a set of sequences to a profile HMM. I would like to convert the individual alignments into one (multiple sequence) alignment object. I tried to build a new map for my msa by retrieving the sequence symbollist from the statepaths and the sequence names. The problem with this approach is that the symbollists differ in length and the alignments haven't been 'zipped' to take redundant gaps into account.
I was wondering if biojava supports conversion of a set of alignments into a multiple sequence alignment so that all alignments will have the same length. Thanks, Henry Romijn _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
