Guys, Could someone who know acedb take a look at it? I just did a clean checkout from the cvs and ant still crashed on me.
The build.xml references the resources directory which doesn't exist (should probably be commented in). It looks like it's missing some biojava code as well in there. It's giving me a ton of mistakes when trying to compile either. Did someone manage to do a build from a fresh checkout recently? Francois -----Original Message----- From: Suman Kanuganti [mailto:[EMAIL PROTECTED] Sent: 11 aout, 2003 12:00 To: Francois Pepin Subject: RE: [Biojava-l] Re: biojava-acedb Well right, I logged in root whatsoever for the permissions. [EMAIL PROTECTED] biojava-acedb]# ant Buildfile: build.xml init: prepare: [mkdir] Created dir: /home/newton/biojava-acedb/ant-build prepare-src: [mkdir] Created dir: /home/newton/biojava-acedb/ant-build/src [mkdir] Created dir: /home/newton/biojava-acedb/ant-build/classes [copy] Copying 53 files to /home/newton/biojava-acedb/ant-build/src [copy] Copying 1 file to /home/newton/biojava-acedb/ant-build/src BUILD FAILED file:/home/newton/biojava-acedb/build.xml:89: /home/newton/biojava-acedb/resources not found. -- I manually created the resources directory, then I ant again, it tries to compile AceSequence.java at first and fails when it is looking for org.biojava.bio.seq.genomic.* ; I looked at api, but I havent found this package. Even I noticed it first time. So could you tell me how to resolve this, here is a part of the error, [EMAIL PROTECTED] biojava-acedb]# ant -buildfile build.xml Buildfile: build.xml init: prepare: prepare-src: compile: [javac] Compiling 45 source files to /home/newton/biojava-acedb/ant-build/classes [javac] This version of java does not support the classic compiler; upgrading to modern [javac] /home/newton/biojava-acedb/ant-build/src/org/acedb/seq/AceSequence.java: 33: package org.biojava.bio.seq.genomic does not exist [javac] import org.biojava.bio.seq.genomic.*; [javac] ^ [javac] /home/newton/biojava-acedb/ant-build/src/org/acedb/seq/AceAnnotation.jav a:34: org.acedb.seq.AceAnnotation should be declared abstract; it does not define isUnchanging(org.biojava.utils.ChangeType) in org.acedb.seq.AceAnnotation ....... and continues, as the first one itself failed. Thanks for any suggestions, Suman K --- Francois Pepin <[EMAIL PROTECTED]> wrote: > Hi Suman, > > My guess is that you have a permission problem > somewhere, or that your > disk is full or something similar. > > Try to see if you can create that directory by > yourself. > > The error seems to be about being able to create the directory itself. > It happened before any of the code was touched for compilation, so the > problem would not be with the code, but with the > machine that you're > building on. > > Francois > > -----Original Message----- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of Suman Kanuganti > Sent: 10 aout, 2003 18:40 > To: [EMAIL PROTECTED] > Subject: [Biojava-l] Re: biojava-acedb > > > I figured out something that I need to use ant to > build the acedb-biojava, with the build.xml provided > by the package. Now the problem: > > [EMAIL PROTECTED] bin]$ ant -buildfile ~/biojava-acedb/build.xml > Buildfile: /home/newton/biojava-acedb/build.xml > > init: > > prepare: > > BUILD FAILED > file:/home/newton/biojava-acedb/build.xml:61: > Directory /home/newton/biojava-acedb/ant-build > creation was not successful for an unknown reason > > Total time: 1 second > > Any suggestions, > Suman K > > > --- Suman Kanuganti <[EMAIL PROTECTED]> > wrote: > > Is there any jar for acedb-biojava for running its programs. I > > downloaded biojava-acedb.tar but > couldnt > > figure how to build corresponding .jar to add it > in > > my > > path. > > > > Could any one tell me about this? > > > > Suman K > > > > __________________________________ > > Do you Yahoo!? > > Yahoo! SiteBuilder - Free, easy-to-use web site > > design software > > http://sitebuilder.yahoo.com > > > > > ===== > Suman K > BioInformatics Associate, > Genomics Research, > University of Missouri - Columbia. > > __________________________________ > Do you Yahoo!? > Yahoo! SiteBuilder - Free, easy-to-use web site > design software > http://sitebuilder.yahoo.com > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > ===== Suman K BioInformatics Associate, Genomics Research, University of Missouri - Columbia. __________________________________ Do you Yahoo!? Yahoo! SiteBuilder - Free, easy-to-use web site design software http://sitebuilder.yahoo.com _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
