I wrote a program to find TF binding sites using a WeightMatrixAnnotator, but when I 
try to annotate a sequence if the sequences has any N or X then everything matches.  
How do I get the WeightMatrixAnnotator to ignore the Ns or Xs?
thanks,
Brian Cox
Samuel Lunenfeld Research Institute
Mount Sinai Hospital, Rm 884
Toronto, Ontario
Canada

416-586-8266
_______________________________________________
Biojava-l mailing list  -  [EMAIL PROTECTED]
http://biojava.org/mailman/listinfo/biojava-l

Reply via email to