I am parsing some Swiss-Prot files with Biojava 1.3 and need to put the contents into Sequence Collections. It does not crash but there are two problems:
1. Each annotation is shown as the tag, followed by a colon and then the content, so for example AC :Q9L867. Other parsers seem to be happy to convert the tags into meaningful description, is there some inherent problem with SWISS-PROT?
2. Features are not recognized in most cases.
Has anyone found workarounds for these.
Cheers, Vasa
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