Hi -
I think we could do a much better job on SwissProt parsing. Esp with some of the
facilities in Biojava-live. Any volunteers with a spare hour or two up there sleaves?
- Mark
-----Original Message-----
From: Vasa Curcin [mailto:[EMAIL PROTECTED]
Sent: Thu 9/10/2003 12:56 a.m.
To: [EMAIL PROTECTED]
Cc:
Subject: [Biojava-l] Question about Swiss-Prot parsing
Hello,
I am parsing some Swiss-Prot files with Biojava 1.3 and need to put the
contents into Sequence Collections. It does not crash but there are two
problems:
1. Each annotation is shown as the tag, followed by a colon and then the
content, so for example AC :Q9L867. Other parsers seem to be happy to
convert the tags into meaningful description, is there some inherent
problem with SWISS-PROT?
2. Features are not recognized in most cases.
Has anyone found workarounds for these.
Cheers,
Vasa
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