This is exactly the sort of thing that ComponentFeature is designed for. I don't know if we have a user instantiable sequence class that you can use out of the box - perhaps Assembly is it. I will take a look monday
Matthew --- Keith James <[EMAIL PROTECTED]> wrote: > >>>>> "Mark" == Schreiber, Mark > <[EMAIL PROTECTED]> writes: > > Mark> Hi - We get asked this a lot. > Unfortunately there isn't an > Mark> easy solution. If you have access to all > of the files > Mark> referenced in the main EMBL file then you > could write a > Mark> simple program to retrieve and open them > all and then use > Mark> something like Edit functions to join them > together. > > Is this the purpose of Assembly and > ComponentFeature? I haven't used > these, but it looks like you can create an aggregate > sequence. I had a > brief look at the code and it seems that a current > limitation is that > new features cannot be created on the component > sequences. > > See NewSimpleAssemblyTest in tests which creates a > SimpleAssembly > (which isa Sequence) from 6 smaller Sequences. > > Keith > > -- > > - Keith James <[EMAIL PROTECTED]> Microarray > Facility, Team 65 - > - The Wellcome Trust Sanger Institute, Hinxton, > Cambridge, UK - > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l ________________________________________________________________________ Want to chat instantly with your online friends? Get the FREE Yahoo! Messenger http://mail.messenger.yahoo.co.uk _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
