Hi - I'm not sure serializing an entire SequenceDB is a good idea, however, can you tell me if the serialization is failing on the DB or one of the sequences in it?
- Mark > -----Original Message----- > From: Vasa Curcin [mailto:[EMAIL PROTECTED] > Sent: Tuesday, 18 November 2003 11:28 p.m. > To: [EMAIL PROTECTED] > Subject: [Biojava-l] Serialization of SequenceDB obtained > from Swiss-Prot > > > Hello, > > There seems to be some problem with serializing SequenceDB objects > obtained from SwissProtDatabase. The error is: > > java.io.WriteAbortedException: writing aborted; java.io.NotSeria > lizableException: > org.biojava.bio.seq.io.SequenceBuilderBase$TemplateWithChildre > n > at > java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1278) > at > java.io.ObjectInputStream.readObject(ObjectInputStream.java:324) > at java.util.HashSet.readObject(HashSet.java:272) > at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > at > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl. > > I am using Biojava 1.30, with Mark's patches from a few weeks back. > Anyone has an idea? > > Regards, > Vasa > > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
