Hi Lorna, This is really good. Writing files correctly has been a weak point in biojava. I have committed your changes to the 1.3.1 branch and I will put them on the biojava-live branch shortly.
If there are any volunteers the writing of GenPept and SwissProt files also sucks badly. International fame and adoration await the person who fixes them :) - mark > -----Original Message----- > From: Lorna Morris [mailto:[EMAIL PROTECTED] > Sent: Tuesday, 25 November 2003 3:38 a.m. > To: [EMAIL PROTECTED] > Subject: [Biojava-l] EmblFileFormer > > > Hello > > I'm using biojava to parse an EMBL Flat file, modify it, and > dump it out > to file at the end. However when I used SeqIOTools.writeEmbl the file > created, did not have correctly ordered and nested RN, RP, RX, RA, RT > and RL lines. These lines should occur in repeated sets, one set for > each reference in the flat file. I've modified some of the biojava > classes and added 2 new classes to correct this. Everthing works fine > now. I'm attatching the classes to this mail. > > Files modfied: > > EmblLikeFormat > EmblFileFormer > SeqIOEventEmitter > GenEmblPropertyComparator > > Files added: > > ReferenceAnnotation.java > EmblReferenceComparator.java > > If you need any more details on the changes I've made let me > know. Thanks, > > Lorna > ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
