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• [Biojava-l] blast in an applet applet Dr. Christoph Gille
• [Biojava-l] Install question: classpath and use of jar files in compiling TestEmbl.java Travis Rodkey
  • Re: [Biojava-l] Install question: classpath and use of jar files in compiling TestEmbl.java Tamas Horvath
  • Re: [Biojava-l] Install question: classpath and use of jar files in compiling TestEmbl.java Andy Yates
• [Biojava-l] modify structure Tamas Horvath
  • Re: [Biojava-l] modify structure Andreas Prlic
  • Re: [Biojava-l] modify structure Tamas Horvath
  • Re: [Biojava-l] modify structure Tamas Horvath
  • Re: [Biojava-l] modify structure Andreas Prlic
  • Re: [Biojava-l] modify structure Tamas Horvath
  • Re: [Biojava-l] modify structure Tamas Horvath
  • Re: [Biojava-l] 3d structure rotation code Andreas Prlic
  • RE: [Biojava-l] modify structure Richard HOLLAND
• [Biojava-l] Problem with downloading Genbank-sequence Felix Dreher
  • Re: [Biojava-l] Problem with downloading Genbank-sequence Thomas Down
  • Re: [Biojava-l] Problem with downloading Genbank-sequence Felix Dreher
  • Re: [Biojava-l] Problem with downloading Genbank-sequence Michael Heuer
  • Re: [Biojava-l] Problem with downloading Genbank-sequence Felix Dreher
  • Re: [Biojava-l] Problem with downloading Genbank-sequence Felix Dreher
• [Biojava-l] help on blast Parveen k
  • Re: [Biojava-l] help on blast Francois Pepin
  • [Biojava-l] help on blast W. Eric Trull
  • [Biojava-l] help on blast Parveen k
• [Biojava-l] sturcture.io Tamas Horvath
  • Re: [Biojava-l] sturcture.io Andreas Prlic
  • Re: [Biojava-l] sturcture.io Tamas Horvath
  • Re: [Biojava-l] sturcture.io Tamas Horvath
  • RE: [Biojava-l] sturcture.io Richard HOLLAND
• [Biojava-l] "error loading ontology terms" Felix Dreher
• [Biojava-l] edit problems with SimpleGappedSequence Dan Cardin
  • Re: [Biojava-l] edit problems with SimpleGappedSequence mark . schreiber
• [Biojava-l] DAS questions Ola Spjuth
  • Re: [Biojava-l] DAS questions Andreas Prlic
  • RE: [Biojava-l] DAS questions Richard HOLLAND
• [Biojava-l] Multiple alignment display issues Russ Kepler
• [Biojava-l] Multiple questions Ola Spjuth
  • Re: [Biojava-l] Multiple questions Kalle Näslund
  • Re: [Biojava-l] Multiple questions Ola Spjuth
  • Re: [Biojava-l] Multiple questions mark . schreiber
  • RE: [Biojava-l] Multiple questions Richard HOLLAND
  • Re: [Biojava-l] Multiple questions mark . schreiber
  • RE: [Biojava-l] Multiple questions Richard HOLLAND
• [Biojava-l] Issues with FlexibleAlignment Russ Kepler
  • Re: [Biojava-l] Issues with FlexibleAlignment Matthew Pocock
  • Re: [Biojava-l] Issues with FlexibleAlignment Russ Kepler
  • Re: [Biojava-l] Issues with FlexibleAlignment Matthew Pocock
• [Biojava-l] Error loading ontology terms Felix Dreher
  • Re: [Biojava-l] Error loading ontology terms Matthew Pocock
  • Re: [Biojava-l] Error loading ontology terms Francois Pepin
  • RE: [Biojava-l] Error loading ontology terms Richard HOLLAND
• [Biojava-l] Using the Meme class Te-yuan Chyou
  • Re: [Biojava-l] BaumWelchTrainer Broken??!!! (please help) Martin Eklund
  • Re: [Biojava-l] Using the Meme class mark . schreiber
• [Biojava-l] install Biojava Te-yuan Chyou
  • RE: [Biojava-l] install Biojava Richard HOLLAND
• [Biojava-l] Annotation Christian Köberle
  • Re: [Biojava-l] Annotation Christian Köberle
  • Re: [Biojava-l] Annotation mark . schreiber
  • Re: [Biojava-l] Annotation mark . schreiber
• [Biojava-l] Announcement: Bioclipse Ola Spjuth
• [Biojava-l] BaumWelchTrainer Broken??!!! (please help) Todd Riley
  • Re: [Biojava-l] BaumWelchTrainer Broken??!!! (please help) mark . schreiber
  • Re: [Biojava-l] BaumWelchTrainer Broken??!!! (please help) Todd Riley
  • Re: [Biojava-l] BaumWelchTrainer Broken??!!! (please help) Todd Riley
  • [Biojava-l] Looking for a Fisher(like) Kernel Todd Riley
  • [Biojava-l] Re: Looking for a Fisher(like) Kernel Matthew Pocock
  • Re: [Biojava-l] BaumWelchTrainer Broken??!!! (please help) mark . schreiber
  • Re: [Biojava-l] BaumWelchTrainer Broken??!!! (please help) mark . schreiber
• [Biojava-l] Extract accession number out of xml blast result Andreas Scheucher
  • RE: [Biojava-l] Extract accession number out of xml blast result Richard HOLLAND
  • RE: [Biojava-l] Extract accession number out of xml blast result mark . schreiber
• [Biojava-l] Dazzle and Ensembl 34 Ilari Scheinin
• [Biojava-l] BioJavaX ready for testing Richard HOLLAND
  • Re: [Biojava-l] BioJavaX ready for testing mark . schreiber
• [Biojava-l] ABITrace and quality values Russ Kepler
• [Biojava-l] [ANN]: VTD-XML 1.0 released Jimmy zhang
• [Biojava-l] substitution matrices and probability mark . schreiber
• [Biojava-l] Disabling SequencePanel updates Joel Peter William Pitt
  • Re: [Biojava-l] Disabling SequencePanel updates mark . schreiber
• [Biojava-l] Another problem with TaxonFactories Andreas Dräger
  • RE: [Biojava-l] Another problem with TaxonFactories Richard HOLLAND
• [Biojava-l] moving to java 1.5 Dr. Christoph Gille
• [Biojava-l] BioJava with BioSQL schema on Oracle database Duangdaow Kanhasiri
  • RE: [Biojava-l] BioJava with BioSQL schema on Oracle database Duangdaow Kanhasiri
• [Biojava-l] [Biojava-dev] Java 1.5 (final chance to object) W. Eric Trull
• [Biojava-l] Re: [Biojava-dev] Java 1.5 (final chance to object) mark . schreiber
• [Biojava-l] Java 1.5 (final chance to object) mark . schreiber
  • [Biojava-l] Re: [Biojava-dev] Java 1.5 (final chance to object) Andreas Prlic
  • Re: [Biojava-l] Java 1.5 (final chance to object) Andy Yates
  • [Biojava-l] Java 1.5 (final chance to object) mark . schreiber
• [Biojava-l] agave, game, game12 mark . schreiber
• [Biojava-l] JDK 1.5 mark . schreiber
• [Biojava-l] Building from CVS d . lapointe
  • Re: [Biojava-l] Building from CVS mark . schreiber
• [Biojava-l] Graph library mark . schreiber
  • Re: [Biojava-l] Graph library Gary Bader
  • Re: [Biojava-l] Graph library Michael Heuer
  • Re: [Biojava-l] Graph library mark . schreiber
  • Re: [Biojava-l] Graph library Gary Bader
• [Biojava-l] Asn.1 Parser Felipe Albrecht
  • Re: [Biojava-l] Asn.1 Parser Michael Heuer
• [Biojava-l] Apache License vs. (L)GPL Martin Szugat
  • Re: [Biojava-l] Apache License vs. (L)GPL Ross Gibb
  • RE: [Biojava-l] Apache License vs. (L)GPL Martin Szugat
  • Re: [Biojava-l] Apache License vs. (L)GPL Michael Heuer
  • RE: [Biojava-l] Apache License vs. (L)GPL Martin Szugat
  • Re: [Biojava-l] Apache License vs. (L)GPL mark . schreiber
  • RE: [Biojava-l] Apache License vs. (L)GPL Martin Szugat
• [Biojava-l] classpath Maxime Caron
  • Re: [Biojava-l] classpath mark . schreiber
  • RE: [Biojava-l] classpath Richard HOLLAND
• [Biojava-l] Newbie Question: Blast Results Visualization Renee Halbrook
  • Re: [Biojava-l] Newbie Question: Blast Results Visualization mark . schreiber
• [Biojava-l] 3 questions and problems Andreas Dräger
  • Re: [Biojava-l] 3 questions and problems mark . schreiber
  • RE: [Biojava-l] 3 questions and problems Richard HOLLAND
  • RE: [Biojava-l] 3 questions and problems mark . schreiber
• [Biojava-l] is valid character Eric Buckley
  • RE: [Biojava-l] is valid character Richard HOLLAND
• [Biojava-l] Global Sequence Alignment Andreas Dräger
  • [Biojava-l] Global Sequence Alignment Andreas Dräger
  • [Biojava-l] Global Sequence Alignment Andreas Dräger
  • [Biojava-l] Global Sequence Alignment Andreas Dräger
  • Re: [Biojava-l] Global Sequence Alignment mark . schreiber
• [Biojava-l] Globla Sequence Alignment Andreas Dräger
• [Biojava-l] Global Alignment Andreas Dräger
• [Biojava-l] [offtopic] biojava developers in the UK mark . schreiber
• [Biojava-l] sequence masking? Douglas Hoen
  • Re: [Biojava-l] sequence masking? mark . schreiber
• [Biojava-l] SCF parser problem Zhao, Yongmei
  • Re: [Biojava-l] SCF parser problem Andy Yates
  • Re: [Biojava-l] SCF parser problem mark . schreiber
• [Biojava-l] RE: [BioSQL-l] Special cases of protein data Richard HOLLAND
• [Biojava-l] parse (recent) blast output Dominique Vlieghe
  • Re: [Biojava-l] parse (recent) blast output mark . schreiber
• [Biojava-l] Newbie Installation Question Carl Manaster
  • RE: [Biojava-l] Newbie Installation Question Richard HOLLAND
  • RE: [Biojava-l] Newbie Installation Question mark . schreiber
  • Re: [Biojava-l] Newbie Installation Question Carl Manaster
• [Biojava-l] Blast xml parser question -- new to Biojava Renee Halbrook
  • RE: [Biojava-l] Blast xml parser question -- new to Biojava Richard HOLLAND
• [Biojava-l] ZTR trace file parser? Zhao, Yongmei
  • RE: [Biojava-l] ZTR trace file parser? Richard HOLLAND
  • Re: [Biojava-l] ZTR trace file parser? mark . schreiber
• [Biojava-l] Add Symbols in a Sequence Felipe Albrecht
  • RE: [Biojava-l] Add Symbols in a Sequence Richard HOLLAND
• [Biojava-l] RNA alignment Christian Köberle
  • Re: [Biojava-l] RNA alignment mark . schreiber
• [Biojava-l] Construct a phylogenetic tree Sébastien PETIT
  • Re: [Biojava-l] Construct a phylogenetic tree Jan Würthner
  • Re: [Biojava-l] Construct a phylogenetic tree mark . schreiber
• [Biojava-l] Gibbs sampling demo mark . schreiber
• [Biojava-l] Reverse transcription Jacob Rohde
  • Re: [Biojava-l] Reverse transcription mark . schreiber
  • Re: [Biojava-l] Reverse transcription Jacob Rohde
  • Re: [Biojava-l] Reverse transcription mark . schreiber
  • Re: [Biojava-l] Reverse transcription mark . schreiber
  • Re: [Biojava-l] Reverse transcription Jacob Rohde
  • Re: [Biojava-l] Reverse transcription mark . schreiber
• [Biojava-l] Compress Sequences. Felipe Albrecht
  • Re: [Biojava-l] Compress Sequences. mark . schreiber
• [Biojava-l] biojava and matlab mark . schreiber
• [Biojava-l] Sequence and String Felipe Albrecht
  • RE: [Biojava-l] Sequence and String Richard HOLLAND
  • RE: [Biojava-l] Sequence and String mark . schreiber
• [Biojava-l] Cast to Sequence Jacob Rohde
  • Re: [Biojava-l] Cast to Sequence Tom Oinn
  • Re: [Biojava-l] Cast to Sequence Tom Oinn
  • Re: [Biojava-l] Cast to Sequence mark . schreiber
• [Biojava-l] Protein CharacterTokenization Tal Blum
  • Re: [Biojava-l] Protein CharacterTokenization mark . schreiber
• [Biojava-l] Trouble with GOParser Óscar D. Sánchez Jiménez
  • Re: [Biojava-l] Trouble with GOParser mark . schreiber
• [Biojava-l] New Biojava in Anger examples mark . schreiber
• [Biojava-l] Announce: Biojava1.4 released mark . schreiber
• [Biojava-l] pairwise alignments mark . schreiber
• [Biojava-l] FASTA Parser problems Williamson, TC
  • RE: [Biojava-l] FASTA Parser problems Richard HOLLAND
• [Biojava-l] application to manipulate sequence and annotation gregory voisin
  • Re: [Biojava-l] application to manipulate sequence and annotation mark . schreiber
• [Biojava-l] Blast Format Writer Felipe Albrecht
  • Re: [Biojava-l] Blast Format Writer mark . schreiber
• [Biojava-l] HMMER Aijazuddin Syed
  • Re: [Biojava-l] HMMER mark . schreiber
• [Biojava-l] field names in term_synonym bradford powell
  • RE: [Biojava-l] field names in term_synonym Richard HOLLAND
• Re: [Biojava-l] Dealing with huge sequences (was: "memory leak while reading nr.fasta") mark . schreiber
• RE: [Biojava-l] Dealing with huge sequences (was: "memory leak whilereading nr.fasta") Richard HOLLAND
• [Biojava-l] New look for BJIA mark . schreiber
  • Re: [Biojava-l] New look for BJIA Koen van der Drift
  • [Biojava-l] New look for BJIA Sylvain Foisy
  • Re: [Biojava-l] New look for BJIA mark . schreiber
  • RE: [Biojava-l] New look for BJIA Richard HOLLAND
  • RE: [Biojava-l] New look for BJIA mark . schreiber
  • RE: [Biojava-l] New look for BJIA Richard HOLLAND
  • RE: [Biojava-l] New look for BJIA Takeshi Sasayama
• [Biojava-l] RE: memory leak while reading nr.fasta Gem Yang
• [Biojava-l] memory leak while reading nr.fasta Gem Yang
  • RE: [Biojava-l] memory leak while reading nr.fasta Richard HOLLAND
  • Re: [Biojava-l] Dealing with huge sequences (was: "memory leak while reading nr.fasta") Aaron Darling

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