On Tuesday 02 Dec 2003 4:49 pm, Alberto Ambesi wrote:
> hi, I found this bug when using Distrubutions iteratively many times.
> The problem is that when creating Distrubution objects iteratively
> computation time for each iteration increases with time.
>
> this is a piece of code that demonstrates the issue:
>
> public class DistributionTest {
> public static void main(String[] args) throws Exception{
> long timePoint = System.currentTimeMillis();
> for (int i=0; i<2500; i++) {
> Map map = new HashMap();
> map.put("seq0", DNATools.createDNA("aggag"));
> map.put("seq1", DNATools.createDNA("aggaa"));
> map.put("seq2", DNATools.createDNA("aggag"));
> map.put("seq3", DNATools.createDNA("aagag"));
> Alignment align = new SimpleAlignment(map);
> Distribution[] dists = distOverAlignment2(align, false,
> 0.01);
> long previousPoint = timePoint;
> timePoint = System.currentTimeMillis();
> System.out.println(timePoint - previousPoint);
> }
> }
> }
>
Could you provide the source to distOverAlignment2 so it becomes clear what
it is doing?
Thanks,
David Huen
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