Hi,
I need to create a quick & dirty database from a Genbank File, which
contains many entries. It seems that I can do this with
org.biojava.bio.program.indexdb.IndexTools.indexGenbank(...).
But how can I get the Entries by ID, once the index is created? It seems
that the following works:
BioStore bst = new BioStore(new java.io.File("/path/to/indexdir"), false);
Record rec = bst.get("id_of_genbank_enty");
But Record is an interface and therefore without the implementation I would
like to have (the implementation to read out the desired Genbank entry and
e.g. have it as a Sequence object) .
Are there somewhere implementations in biojava-1.30 for processing these
Standard Records - resp. is there another way to do it without the need to
extract the record from the file by parsing the byte-oriented RAF that one can get
by rec.getFile()?
Thanks in advance for any help,
Eckhard ;)
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