Is there a way to get the middle line of an alignment that I parse out of the blast output? In the example below, it would be the "S++VGTR..." line. In the Alignment of the SeqSimilaritySearchSubHit, I only find a Sequence entry for Query and Sbjct.
Query: 2 SFEVGTRCWYPHKELGWIGAEVIKNEFNDGKYHLEL...
S++VGTR W P GW+ +EV+K + K L ...
Sbjct: 4 SYDVGTRAWQPDPTEGWVASEVVKKTVDGNKVTLIF...
Thanks, Christian _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
