Hi, I used the bj_in_anger code when I had the sequence I/O problems; and I found the reason: I used JDK 1.3; worked fine when I switched to 1.4; Sorry, mea culpa
Clemens > Hi - > > Could you post your code and an example GenBank or EMBL accession as well > so we can get an idea of what might be going wrong? Alternatively you > might want to look at http://www.biojava.org/docs/bj_in_anger/ for some > examples of sequence I/O > > - Mark > > Mark Schreiber > Principal Scientist (Bioinformatics) > > Novartis Institute for Tropical Diseases (NITD) > 10 Biopolis Road > #05-01 Chromos > Singapore 138670 > www.nitd.novartis.com > > phone +65 6722 2973 > fax +65 6722 2910 > > > > > > "Clemens Steegborn" <[EMAIL PROTECTED]> > Sent by: [EMAIL PROTECTED] > 06/08/2004 05:28 AM > > > To: [EMAIL PROTECTED] > cc: > Subject: [Biojava-l] reading sequence files > > > > Hi, > > I have problems to extract sequence data from files (Genbank or EMBL) > using > BioJava 1.3; I can get sequence names or annotations, but when I try to > get > the sequence itself, I get a null pointer exception! Can anybody help? > Thanks .. > > Clemens > > -- > ------------------------------- > Clemens Steegborn, Ph.D. > Dept. Biochemistry > Cornell Medical School > 1300 York Avenue > New York, NY 10021 > > "Sie haben neue Mails!" - Die GMX Toolbar informiert Sie beim Surfen! > Jetzt aktivieren unter http://www.gmx.net/info > > _______________________________________________ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l > > > -- ------------------------------- Clemens Steegborn, Ph.D. Dept. Biochemistry Cornell Medical School 1300 York Avenue New York, NY 10021 "Sie haben neue Mails!" - Die GMX Toolbar informiert Sie beim Surfen! Jetzt aktivieren unter http://www.gmx.net/info _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
