Hi Mark,
I have written various parsers for pfam - they are a bit hacky though. I can tidy them up and commit them to biojava if you like. Are you accessing the pfam relational databases, or flatfiles?
Thanks,
Lachlan
Message: 3 Date: Wed, 7 Jul 2004 09:47:12 +0800 From: [EMAIL PROTECTED] Subject: [Biojava-l] PFAM parser To: [EMAIL PROTECTED] Message-ID: <[EMAIL PROTECTED]> Content-Type: text/plain; charset="us-ascii"
Hi All -
Is anyone aware of a java parser for PFAM? Must be open-source (preferably LGPL or similar) but doesn't have to be biojava.
- Mark
Mark Schreiber Principal Scientist (Bioinformatics)
Novartis Institute for Tropical Diseases (NITD) 10 Biopolis Road #05-01 Chromos Singapore 138670 www.nitd.novartis.com
phone +65 6722 2973 fax +65 6722 2910
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