Hello,
[I am a new user of BioJava, so please forgive any obvious errors I may make.]
I was trying to modify the PairwiseAlignment demo to show the traditional output of alignment programs, i.e. the aligned sequences alongside one another. It seems this information is available from:
StatePath result = aligner.viterbi(seqs, ScoreType.PROBABILITY);
I was able to get result.symbolListForLabel(StatePath.SEQUENCE) and display the symbols, but these seem to have both sequences in each symbol (of class SimpleAtomicSymbol). I could parse out each sequence from the combined SymbolList, but I was wondering if there is a better way to achieve this.
Thanks, Rahul _______________________________________________ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l
