On Nov 10, 2004, at 4:35 AM, Koen van der Drift wrote:
So far I was treating biojava and my own code as 2 different targets in the same project. I will try to make just one target and post here if it worked. Thanks all for the comments,
To follow up on this, it's working now. The trick is to create an "Ant-based Application Jar" project in Xcode (1.5), and copy all the code from the src directory in biojava-1.4pre1 plus my own code into the project. I did have to comment out a couple of lines that start with assert to compile successfully, for instance:
/Users/koen/Desktop/biojavatest2/src/org/biojava/bio/symbol/ SimpleGappedSymbolList.java:408: warning: as of release 1.4, assert is a keyword, and may not be used as an identifier
assert isSane() : "Data corrupted: " + blocks;
^
/Users/koen/Desktop/biojavatest2/src/org/biojava/bio/symbol/ SimpleGappedSymbolList.java:408: ';' expected
assert isSane() : "Data corrupted: " + blocks;
Regarding the suggestions to use the stack trace, I have a C/C++ and GUI background, so I prefer to visually step through the code to see the flow and the values of each variable.
cheers,
- Koen.
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