Hi Egon!
I am the person who contributed the biojava - structure classes. As it turns out I am a very happy Jmol user already for quite a while now! :-)
Using both Biojava and Jmol I am working on a 3D - DAS (distributed annotation system) client to visualize annotations of proteins in both sequence and structure.
http://www.efamily.org.uk/software/dasclients/spice/
To interact between Biojava and Jmol I use the Biojava code to create a PDB file and use this file as an input to Jmol.
Some docu how to incorporate Jmol into another application can be found at
http://wiki.jmol.org/ApplicationsEmbeddingJmol
The website news mentions
org.biojava.bio.structure for holding 3D coordinates (though it's missing
from the JavaDoc on the website),
As far as I know the JavaDoc relates to the last public release, which did not contain the structure classes. Guess it is really time to make a new biojava release!
Greetings, Andreas
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Andreas Prlic Wellcome Trust Sanger Institute
Hinxton, Cambridge CB10 1SA, UK_______________________________________________ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.org/mailman/listinfo/biojava-l
