[EMAIL PROTECTED] wrote:
Just a quick observation that might be relevant, it seems that the only place in SimpleFeature that throws an IllegalArgumentExceptionHi Anna -
It seems the problem may be with the EMBL file.
java.lang.IllegalArgumentException: Location [1045891,1046196] is outside 1..1000000
This part indicates BioJava is trying to make a Feature with the Location [1045891,1046196] which is outside the bounds of the available sequence. It is not allowed to create features outside of the available Sequence. Apparently BioJava is able to find 1000000 bases. Is there actually more sequence than this in the EMBL file?
due to the range being outside the sequence is commented out since some time, with the cvs comment "Various modifications to make
life easier" ( SimpleFeature rev 1.22 ). So this problem seems to have occured for more people, and a quick dirty solution was found.
So, i guess, if Anna is aware of the consequences, ( things might go bad if you want to use these Features ) a solution might be to try
an up to date biojava cvs build.
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