On 26 Jan 2005, at 19:55, Michael Heuer wrote:
Hello,
I would like to use the dazzle GFFAnnotationSource to display predicted
transcripts on the Ensembl web interface, but it's a little bit difficult
to follow tags through from the GFF file to what ends up on the Ensembl
web interface.
I imagine I would want a row in the GFF file for each exon and then group
each exon together into a transcript using something in the tag/value
field. Does anyone have an example?
For Ensembl display, it should be sufficient to include a property named "id" on each GFF record -- all features with matching IDs will be grouped by the ensembl web-code.
Something like:
2L annotation exon 1 7528 0.0 . 0 id "Foo"; some_attribute "Bar"
2L annotation exon 9492 9835 0.0 . 0 id "Foo"
Should behave the way you want.
Thomas
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