Hello Joerg, Biojava usually places feature information in the FeatureHolder of the Sequence that is generated when parsing the file. As you state the annotation entries end up in the Annotation object. You can get an Iterator over the FeatureHolder using sequence.features(). Each feature will contain some basic information such as the type and location plus it will also contain an Annotation bundle itself with any annotations specific to that feature.
To view where everything will end up after parsing take a look at: http://www.biojava.org/docs/bj_in_anger/filter.htm - Mark Joerg Krebs <[EMAIL PROTECTED]> Sent by: [EMAIL PROTECTED] 03/11/2005 09:03 AM To: biojava-l@biojava.org cc: (bcc: Mark Schreiber/GP/Novartis) Subject: [Biojava-l] SwissProt FeatureTable Hi, does anyone know how to parse the FeatureTable Entries of a SwissProt File via the biojava package. With getAnnotation I can only get the annotation entries without the FeatureTable-Entries :( In the Source-Code of biojava 1.4pre1 exists a SwissprotFeatureTableParser.java in src/org/biojava/bio/seq/io/ but it seems to be not yet ready to use. Maybe someone can help me with my Problem. Thanks Joerg -- Joerg Krebs <[EMAIL PROTECTED]> _______________________________________________ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.org/mailman/listinfo/biojava-l _______________________________________________ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.org/mailman/listinfo/biojava-l
