Hi, I am currently working on an interface biojava <==> STRAP (http://www.charite.de/bioinf/strap/, http://www.charite.de/bioinf/strap/doc/index.pdf).
First I create a GappedSequence object from a StrapProtein object. I include all STRAP anntotations and STRAP features. The features are subsets of the sequences with annotations like notes, URLs, TeXshade commands, Pymol commands, Rasmol commands. Second I create a converter the other way round. It makes a StrapProtein from a biojava Sequence with all its annotations and features. Does anybody has ideas, what tool could cooperate with STRAP using this interface ? The STRAP plugin technology alows even larger JAVA programs to be plugged in, simply by copying the jar-library into a special directory. Currently a few groups are creating plugins for STRAP. I hope that people will benefit from the biojava interface. Christoph _______________________________________________ Biojava-l mailing list - [email protected] http://biojava.org/mailman/listinfo/biojava-l
