Hi Christoph, before you put in a lot of work, you might want to check the licenses. I think STRAP comes under GPL, and Biojava comes under lGPL. This might cause some problems, depending on what you plan to do.
Christian > Message: 2 > Date: Fri, 8 Apr 2005 16:37:51 +0200 (CEST) > From: "Dr. Christoph Gille" <[EMAIL PROTECTED]> > Subject: [Biojava-l] (no subject) > To: biojava-l@biojava.org > Message-ID: > <[EMAIL PROTECTED]> > Content-Type: text/plain;charset=iso-8859-1 > > Hi, > > I am currently working on an interface biojava <==> STRAP > (http://www.charite.de/bioinf/strap/, > http://www.charite.de/bioinf/strap/doc/index.pdf). > > First I create a GappedSequence object from a StrapProtein object. > I include all STRAP anntotations and STRAP features. > The features are subsets of the sequences with annotations like > notes, URLs, TeXshade commands, Pymol commands, Rasmol commands. > > Second I create a converter the other way round. > It makes a StrapProtein from a biojava Sequence with all its annotations > and features. > > Does anybody has ideas, what tool could > cooperate with STRAP using this interface ? > > The STRAP plugin technology alows even larger JAVA > programs to be plugged in, simply by copying the > jar-library into a special directory. > Currently a few groups are creating plugins for STRAP. > I hope that people will benefit from the biojava interface. > > Christoph _______________________________________________ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.org/mailman/listinfo/biojava-l
