I've committed some changes to biojava-live which make BioJava compatible with BioSQL when the latter is running on Oracle 9i or greater and using the official schema as per the biosql-schema CVS. This involved adding an autodetect function to detect whether Clobs were used in biosequence or not, and then creating code to work with Clobs where necessary. Two extensions to OracleDBHelper might be useful in other tasks - stringToClob() and clobToString().
I also made some changes to the Ontology part of the BioJava/BioSQL interface, which was not persisting Triples correctly. It would attempt to reference the triple by its unique ID before actually giving it one, which of course fails. This should now be fixed. cheers, Richard Richard Holland Bioinformatics Specialist Genome Institute of Singapore 60 Biopolis Street, #02-01 Genome, Singapore 138672 Tel: (65) 6478 8000 DID: (65) 6478 8199 Email: [EMAIL PROTECTED] --------------------------------------------- This email is confidential and may be privileged. If you are not the intended recipient, please delete it and notify us immediately. Please do not copy or use it for any purpose, or disclose its content to any other person. Thank you. --------------------------------------------- _______________________________________________ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.org/mailman/listinfo/biojava-l
