Hi,
i have solved the problem, so let's share it.
the code line in RestrictionEnzymeManager.java should be changed to the
correct one
as following.
....
// Create site value splitter
RegexSplitter site =
new
RegexSplitter(Pattern.compile("(\\(-?\\d/-?\\d+\\)|[A-Za-z^]+)"), 1); # old one
...
new
RegexSplitter(Pattern.compile("(\\(-?\\d+/-?\\d+\\)|[A-Za-z^]+)"), 1); # new
one
just add one "+" character. hoho, i think it's a mini incaution, not bug.
furthermore, something in my previous draft should be changed too.
0 (#DownstreamEndType) 0 (#DownstreamEndType)
12 (#DownstreamCut[0]) -----> 24 (#DownstreamCut[0])
7 (#DownstreamCut[1]) 19 (#DownstreamCut[1])
Bsp24I
5' ^NNNNNNNNGACNNNNNNTGGNNNNNNNNNNNN^ 3'
3' ^NNNNNNNNNNNNNCTGNNNNNNACCNNNNNNN^ 5'
length(GACNNNNNNTGGNNNNNNNNNNNN)=24
length(CTGNNNNNNACCNNNNNNN)=19
thanks
zhenqing ye
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