Thanks - I knew it would be quite simple, as always with BioJava (once
I've figuered out how to, that is)!
Martina
Simon Foote wrote:
Hi Martina,
To add a feature to a sequence stored in a BioSQL database, all you
have to do is retrieve the sequence and then add a feature to it. The
following simplified code shows you the steps:
// Retrieve the sequence from BioSQLSequenceDB
Sequence seq = bsd.getSequence(id);
// Create new stranded feature
StrandedFeature.Template templ = new StrandedFeature.Template();
templ.location = ...
templ.strand = ...
templ.type = ...
templ.source = ...
templ.annotation = [A created SimpleAnnotation object]
// Add feature to sequence
seq.createFeature(templ);
// Note: adding the feature like this will automatically persist the
feature, so you don't have to worry about doing that.
Cheers,
Simon Foote
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