Hi Mark,
Thanks. The changes that NCBI made to their file formats are large, so
I could write another builder/parser for the new file format, but it
would not map completely to the existing parser (which is now broken
because of NCBI format changes to even the deprecated file format). If
I want to contribute code, who decides that the code is worthy (e.g.
does a design review)? Ideally, this would happen before I start coding.
I haven't figured out if I am going to use the existing framework for
my current project, since the file format has become simpler, but I
would like to contribute if possible.
Thanks,
Gary
[EMAIL PROTECTED] wrote:
Hello -
It seems most of this was contributed by David Huen. I'm not sure if he
plans an update. If the changes are not large then you might want to
consider contributing the changes yourself.
Best of Luck
- Mark
Gary Bader <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
06/08/2005 08:22 AM
To: biojava-l@biojava.org
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject: [Biojava-l] Homologene parser update?
Hi,
I just tried the Homologene parser in biojava 1.4pre1 and
noticed that
it only supports the deprecated Homologene file format and throws a
number of exceptions parsing that file (likely because of updates to the
old file format). Is there an update for this parser available
anywhere? I think it would be very useful.
Thanks,
Gary
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