Hi -
The classes in org.biojava.bio.program.phred might do what you need
although they are more for reading phd files. They may give you a starting
point though.
- Mark
Avinash Kewalramani <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
06/16/2005 03:34 AM
To: [email protected]
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject: [Biojava-l] Phrap output
Hi
I need store some information from an ace assembly file(which is Phrap
plain text output). To do this I will have to write my own parses to
parse this complicated text file.
Is there any class In bioJava or anywhere else which does this.The best
scenario would be if some code converts this file to xml output which
can be easily parsed
I have looked around a bit in Biojava and elsewhere and couldn't find
anything for this. I dont want to use Perl(BioPerl probably has this)
Thanks
--
----------------------------------------------------------------------
Avinash Kewalramani
Technical Lead-Genome Informatics Group
Bioscience Division
Los Alamos National Laboratory
Los Alamos, NM 87545
Phone: 505-664-0527
Cell: 816-213-1908
E-mail: [EMAIL PROTECTED]
----------------------------------------------------------------------
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