What is it that you want from the BLAST record that you are not getting?
- Mark
Sébastien PETIT <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
06/17/2005 08:01 PM
To: biojava-l@biojava.org
cc: (bcc: Mark Schreiber/GP/Novartis)
Subject: [Biojava-l] Parse with HSPHandler ??
Hi everybody...
I try to understand how Biojava works and I have a lot of problem...
Maybe because I'm new in Java and Biojava....
I have files from blast programs of NCBI....
I can get them in text or XML format....
But, my wish is to keep just the aligments sequences and the name of
the protein of each sequence...
I tried to use HspHandler class and the example "BlastParser", given by
Mark Schreiber, but I haven't what I want...And I don't know anymore
how I can do...
If it's not clear, I can try to better explain...Ask me....
(Because I'm French and not very good in English...;);) )
Thank you for any answer..
Sebastien
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