See http://biojava.org/docs/bj_in_anger/BlastParser.htm
Currently only a partial mapping is returned by the default parser. To get full results you have to write your own SearchContentHandler to give to the blast parser, an outline of which is given at http://biojava.org/docs/bj_in_anger/blastecho.htm cheers, Richard Richard Holland Bioinformatics Specialist GIS extension 8199 --------------------------------------------- This email is confidential and may be privileged. If you are not the intended recipient, please delete it and notify us immediately. Please do not copy or use it for any purpose, or disclose its content to any other person. Thank you. --------------------------------------------- > -----Original Message----- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of > Renee Halbrook > Sent: Friday, August 19, 2005 5:51 AM > To: biojava-l@biojava.org > Subject: [Biojava-l] Blast xml parser question -- new to Biojava > > > Hi, > I am pretty new to Biojava. I am trying to use the > blast xml parser. (Specifically, I am using > org.biojava.bio.program.sax.blastxml.BlastParserFacade > in biojava v1.4 ) > Is it possible to get the accession number from blast > output? (equivalent to <Hit_accession> in results.xml > from blast results) > Is there another class that I should be using, > instead, that provides a more complete mapping of the > xml file? > Is there a resource on advice on how to extend this > class, to give more specific results? > > Thanks in advance for any help on this. > > Regards, > Renee Halbrook > > > > > ____________________________________________________ > Start your day with Yahoo! - make it your home page > http://www.yahoo.com/r/hs > > _______________________________________________ > Biojava-l mailing list - Biojava-l@biojava.org > http://biojava.org/mailman/listinfo/biojava-l > _______________________________________________ Biojava-l mailing list - Biojava-l@biojava.org http://biojava.org/mailman/listinfo/biojava-l
