Hi Mark,
GINY is the open source graph library underlying Cytoscape - it is a
separate project on sourceforge for modularity reasons at
http://csbi.sourceforge.net/
This has recently been reimplemented and named FING in the context of
Cytoscape. I'm not sure if the GINY sourceforge site is completely up
to date with the current Cytoscape - so if you're just interested in the
graph library by itself, it would be good to send a message to the
[EMAIL PROTECTED] mailing list asking about it and I
can get the main developer to let you know if the sourceforge package is
up to date.
Gary
[EMAIL PROTECTED] wrote:
Looks interesting. What is the relationship between cytoscape and GINY?
- Mark
Gary Bader <[EMAIL PROTECTED]>
10/03/2005 02:23 PM
To: Mark Schreiber/GP/[EMAIL PROTECTED]
cc: biojava-l@biojava.org
Subject: Re: [Biojava-l] Graph library
Hi Mark,
My favorite is Cytoscape (www.cytoscape.org), which
includes a graph
library (full disclosure - I'm involved in the project). It is LGPL.
You can also look at JUNG (http://jung.sourceforge.net/). It is BSD.
Cytoscape is better suited to biological problems than JUNG and I use it
with Biojava on a regular basis.
Gary
[EMAIL PROTECTED] wrote:
Hello -
Does anyone know of a good java graph library that is LGPL, Apache
license
or similar? Not data graphing but graph as in the mathematical
construct.
- Mark
Mark Schreiber
Principal Scientist (Bioinformatics)
Novartis Institute for Tropical Diseases (NITD)
10 Biopolis Road
#05-01 Chromos
Singapore 138670
www.nitd.novartis.com
phone +65 6722 2973
fax +65 6722 2910
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