If I've got a Group , which is an amino acid, and I want to shift it by a
3Dvector (or 3 2D vectors), how may I do it?Similarly, if i want to rotate the
same structure, how may I do it?If you just can show me a very short sample
code, I'd really appreciate it!Thanks!
On 12/1/05, Tamas Horvath <[EMAIL PROTECTED]> wrote:>> Exactly... I want to
keep a backbone and replace the whole sidechain as> necessary... I know this
should be relatively easy, but I'm a bit lost int> the documentation...>> On
12/1/05, Andreas Prlic <[EMAIL PROTECTED]> wrote:> >> > Hi Tamas,> >> > it is
possible to access the content of a structure and> > change/add/drop groups
and atoms as you wish.> >> > When talking about introducing "point mutations"
I assume you want to> > re-label a residue's main chain> > atoms and drop the
side chain atoms, but keep the Cb one? this would> > take only a few lines to
implement.> >> > Cheers,> > Andreas> >> > On 30 Nov 2005, at 16:21, Tamas
Horvath wrote:> >> > > Is there any way to modify a protein structure by
modifying the> > > contents ofthe Structure object?In short, I have a Structure
object,> > > parsed from a pdb file, and I want tointroduce point mutations to
it,> > > and save the modified structure to a pdbfile for f!
urther analysis...> > > (I intend to use gromacs for instance if itmatters)...>
> > _______________________________________________> > > Biojava-l mailing list
- Biojava-l@biojava.org> > > http://biojava.org/mailman/listinfo/biojava-l> >
>> > >> >
-----------------------------------------------------------------------> >> >
Andreas Prlic Wellcome Trust Sanger Institute> >
Hinxton, Cambridge CB10 1SA, UK> > +44 (0) 1223
49 6891> >> >>
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