Just a reminder to people with CVS accounts (including myself who is
sometimes guilty of this):
The minimum requirement of CVS is that it will build at all times (using
JDK1.4.2).
The desirable requirement is that it will build and pass all unit tests.
This is not a strict requirement for the live distribution but it is good
to think about what you may have done to break the unit tests.
- Mark
"Richard HOLLAND" <[EMAIL PROTECTED]>
Sent by: [EMAIL PROTECTED]
12/05/2005 09:42 AM
To: "Tamas Horvath" <[EMAIL PROTECTED]>
cc: biojava-l@biojava.org, (bcc: Mark Schreiber/GP/Novartis)
Subject: RE: [Biojava-l] cvs ant build failure
I just checked out the most recent version and found a bug in
EmptyRichAnnotation just as your compiler output indicates. I fixed it.
But... it still won't compile, but now for a different reason. It seems
that Andreas' check-in of his structure classes over the weekend was
missing the Matrix and SingularValueDecomposition classes. Andreas can
you fix this please?
cheers,
Richard
Richard Holland
Bioinformatics Specialist
GIS extension 8199
---------------------------------------------
This email is confidential and may be privileged. If you are not the
intended recipient, please delete it and notify us immediately. Please
do not copy or use it for any purpose, or disclose its content to any
other person. Thank you.
---------------------------------------------
> -----Original Message-----
> From: [EMAIL PROTECTED]
> [mailto:[EMAIL PROTECTED] On Behalf Of
> Tamas Horvath
> Sent: Friday, December 02, 2005 11:09 PM
> To: biojava-l@biojava.org
> Subject: [Biojava-l] cvs ant build failure
>
>
> ant package-biojavaBuildfile: build.xml
> init: [echo] Building biojava-live [echo] Java
> Home:/home/hota/programs/java/jdk1.5.0/jre [echo] JUnit
> present: ${junit.present} [echo] JUnit
> supported by Ant: true [echo] HSQLDB driver
> present: ${sqlDriver.hsqldb}
> prepare:
> prepare-biojava:
> compile-biojava: [javac] Compiling 93 source files
> to/data3/installs/biojava-live/ant-build/classes/biojava
> [javac]/data3/installs/biojava-live/src/org/biojavax/EmptyRich
> Annotation.java:42:org.biojavax.EmptyRichAnnotation is not
> abstract and does not overrideabstract method
> getProperties(java.lang.Object) inorg.biojavax.RichAnnotation
> [javac] public class EmptyRichAnnotation extends
> Unchangeable implementsRichAnnotation, Serializable {
> [javac] ^ [javac] Note: * uses or overrides a
> deprecated API. [javac] Note: Recompile with
> -Xlint:deprecation for details. [javac] 1 error
> BUILD FAILED/data3/installs/biojava-live/build.xml:267:
> Compile failed; see the compilererror output for details.
> _______________________________________________
> Biojava-l mailing list - Biojava-l@biojava.org
> http://biojava.org/mailman/listinfo/biojava-l
>
_______________________________________________
Biojava-l mailing list - Biojava-l@biojava.org
http://biojava.org/mailman/listinfo/biojava-l
_______________________________________________
Biojava-l mailing list - Biojava-l@biojava.org
http://biojava.org/mailman/listinfo/biojava-l
