On Dec 15 2005, Mark Fortner wrote: I think what you want is the SymbolListViews.orderNSymbolList method.
It will take a SymbolList and turn it into another where it is viewed in another compound alphabet of the required order.
I'm looking for the best way to iterate through all nmers within a given sequence. For example, given a sequence that looks like this: ACTGACTGACTG If I extract all trimers from this I should get: ACT CTG TGA GAC ACT CTG TGA GAC ACT CTG Is there an existing class that will allow me to iterate through a sequence this way, or am I on my own?
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