On 5 Jan 2006, at 10:07, Jolyon Holdstock wrote:

Hi

I ran cvs update -Pd and then repeated the Ant command.

I can see it has updated as I'm trying to compile an extra source file

[javac] Compiling 1280 source files

But the build fails with the same error.

Is there a work around I could use?

I'm wondering if you might have an old version of BioJava lying around on your CLASSPATH or in a JDK extensions directory? There's only one copy of ProjectedFeatureHolder in the source tree but long ago in a galaxy far, far away it used to live in bio.seq rather than bio.seq.projection. I suspect you have a copy that pre-dates this move.

Alternatively, you could just update the import statements to import individual classes:

          import org.biojava.bio.seq.projection.ProjectedFeatureHolder;

instead of

          import org.biojava.bio.seq.projection.*;

Thomas.
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